Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   I5593_RS00930 Genome accession   NZ_CP065432
Coordinates   209614..212445 (-) Length   943 a.a.
NCBI ID   WP_000083358.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 204614..217445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS00920 (I5593_00920) - 206037..207743 (+) 1707 WP_000016110.1 GGDEF domain-containing protein -
  I5593_RS00925 (I5593_00925) - 207828..209534 (+) 1707 WP_001101472.1 hypothetical protein -
  I5593_RS00930 (I5593_00930) uvrA 209614..212445 (-) 2832 WP_000083358.1 excinuclease ABC subunit UvrA Machinery gene
  I5593_RS00935 (I5593_00935) - 212742..213344 (+) 603 WP_000826320.1 TetR/AcrR family transcriptional regulator -
  I5593_RS00940 (I5593_00940) - 213348..214325 (+) 978 WP_001256579.1 zinc-binding dehydrogenase -
  I5593_RS00945 (I5593_00945) - 214391..214744 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  I5593_RS00950 (I5593_00950) - 214797..215138 (+) 342 WP_000263329.1 GlpM family protein -
  I5593_RS00955 (I5593_00955) tenA 215188..215862 (-) 675 WP_000899418.1 thiaminase II -
  I5593_RS00960 (I5593_00960) - 216125..217207 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -

Sequence


Protein


Download         Length: 943 a.a.        Molecular weight: 104284.60 Da        Isoelectric Point: 6.4827

>NTDB_id=447155 I5593_RS00930 WP_000083358.1 209614..212445(-) (uvrA) [Acinetobacter baumannii strain ATCC 17961]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDELAKHADSLTGQYLSGKLKIEVPKQRTQPPKPEEKIKLSGAAGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIYRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=447155 I5593_RS00930 WP_000083358.1 209614..212445(-) (uvrA) [Acinetobacter baumannii strain ATCC 17961]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGCACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTAATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTATGCCGAAGGACAGCGCC
GTTACGTCGAATCACTTTCAGCGTATGCCCGCCAGTTCTTATCGCAAATGGAAAAACCTGAAGTTGACTCGATTGAAGGT
TTATCGCCAGCCATTGCGATTGAGCAAAAGTCTACCAGTCATAACCCACGTTCAACGGTTGGTACGATTACCGAAATTTA
TGACTATTTACGTTTGCTTTATGCACGTGTCGGCACGCCCTACTGTCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCAGTAAAAAACCTTGAGGAAGGCACTGCACTCATGTTGCTTGCCCCTGTTGTTCGTGAGCGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTTGTTCGTGCCCGTGTTGATGGCGAAATCATTGA
TATTGATACGCCACCGGAACTCGACAAAAAGAAAAAACATACCATTGAAGTCGTTGTTGACCGCTTTAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAGACTGCACTACGTTTAGGTGGCGATATTGCAGTTTTATCGTGGATGAAT
GGCGAACACCCAGATCGTGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGCGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAACAACCCGTTTGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTCAGTCCTGAAA
AACTCATTCCTAACCCTGAGCTGGCAATTAGTGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTTGGTTTTCAACTTGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
ATTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGCGGCCGTAAACATACACGCGTGCAAC
CTTTTGAAGGAATTTTGCCACACCTTGAACGTCGCTATCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCACAA
TATTTGTCTAATGCAGCTTGTGATGCATGTGGTGGTTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTAAAAGATAA
AACCATTGCCGACATTACCCGCATGTCGATTGGAGATGCCGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTGCACTTCTTAGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGCTCAGCCGAAACATTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTCATGTACGTCCTTGATGAACCATCAATTGGTCTCCATCAACGTGATAATGACCGTTTATTACAAACGCTAATTC
GCTTACGTGATTTGGGCAATACGGTATTAGTCGTGGAACACGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCTGGTGCTGGCGTGCATGGTGGTGTTGTCATTGCTGAAGGTACGTATGATGAGCTGGCTAAACATGCCGACTC
ACTCACAGGTCAATATCTTTCAGGCAAACTCAAAATTGAAGTGCCAAAACAGCGAACTCAACCACCTAAACCTGAAGAAA
AAATTAAACTTTCAGGTGCAGCGGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGACTTGTGTT
ACGGGTGTTTCAGGTTCAGGTAAATCAACACTGATTAACCGTACGTTACTTCCACTGGCTGCAACACAGCTCAACGGTGC
AACAACCTTAACAGCTGAAAAGTTCGACTCGATTGATGGTCTACAACATCTGGACAAAGTCGTTGATATTGACCAAAGCC
CAATTGGCCGTACACCGCGCTCTAACCCAGCGACCTATACGGGACTATTTACACCAATTCGTGAATTATTTGCTCAAACC
CCAGAAGCGAAAGCGCGTGGTTATAGTGCGGGTCGCTTCTCGTTTAACGTAAAAGGCGGACGCTGTGAAGCCTGTGAAGG
CGACGGCATGATTAAAGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCTTGTCATGGTAAGCGCTATA
ACCGTGAAACACTTGAAGTCGGCTATAAAGGCAAAAACATTTCTGATGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTCTTTAGTGCCATTCCAGTTATTTACCGTCGTTTAGAAACCTTAACTCAGGTAGGTCTAGGCTATATTCGTTTAGGTCA
GGCGGCTACTACTTTATCTGGTGGTGAAGCACAGCGTGTCAAACTGGCTCGTGAGTTAGCGAAACGTGATACGGGTAAAA
CGCTTTATATCTTGGATGAACCAACAACAGGTCTGCATTTCCATGATATTGCCAAGTTACTCGATATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATTGTGGTGATTGAACATAACCTTGATGTCATTAAAACAGCAGACTGGGTTGTCGACTTAGG
TCCAGAAGGTGGTTCGGGCGGTGGTATGATCATTGCTGAAGGTACACCTGAACAAGTAGCCGAGGTTGAAATTTCTCATA
CTGGCCGCTTCTTGAAACCGATGTTGAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.25

100

0.563

  uvrA Streptococcus pneumoniae TIGR4

56.25

100

0.563

  uvrA Streptococcus pneumoniae D39

56.25

100

0.563