Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GE023_RS02785 Genome accession   NZ_CP053789
Coordinates   551112..552914 (+) Length   600 a.a.
NCBI ID   WP_093998763.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 546112..557914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS02765 (GE023_002765) nagB 547229..547933 (+) 705 WP_159306015.1 glucosamine-6-phosphate deaminase -
  GE023_RS02770 (GE023_002770) - 548050..548766 (+) 717 WP_093998765.1 pseudouridine synthase -
  GE023_RS02775 (GE023_002775) - 548857..550020 (+) 1164 WP_164401643.1 MFS transporter -
  GE023_RS02780 (GE023_002780) - 550137..551099 (+) 963 WP_159304875.1 competence protein CoiA -
  GE023_RS02785 (GE023_002785) pepF 551112..552914 (+) 1803 WP_093998763.1 oligoendopeptidase F Regulator
  GE023_RS02790 (GE023_002790) - 553103..553543 (+) 441 WP_236493549.1 NADPH-dependent FMN reductase -
  GE023_RS02795 (GE023_002795) - 553767..554309 (+) 543 WP_159304876.1 GNAT family N-acetyltransferase -
  GE023_RS02800 (GE023_002800) - 554309..554968 (+) 660 WP_003044158.1 HAD-IA family hydrolase -
  GE023_RS02805 (GE023_002805) - 554986..555060 (+) 75 Protein_498 HAD family phosphatase -
  GE023_RS02810 (GE023_002810) - 555167..556375 (+) 1209 WP_093998761.1 OFA family MFS transporter -
  GE023_RS02815 (GE023_002815) - 556430..557137 (+) 708 WP_003044150.1 O-methyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69318.26 Da        Isoelectric Point: 4.7152

>NTDB_id=447155 GE023_RS02785 WP_093998763.1 551112..552914(+) (pepF) [Streptococcus canis strain HL_98_2]
MTDNRSHLEEKYTWDLSTIFATDEMWEAEVSQLTTDVEASKEFAGHLLDSSANLLKITKTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMTLSQEDYQTFLTETPELKGYNHFFDKLFQAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPTVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYNSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLAYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLIELEALVAKGVHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=447155 GE023_RS02785 WP_093998763.1 551112..552914(+) (pepF) [Streptococcus canis strain HL_98_2]
ATGACTGATAATCGTAGCCACTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACTGATGAGATGTGGGA
AGCAGAGGTGAGCCAATTAACTACTGATGTTGAGGCTTCTAAAGAGTTTGCTGGTCATTTGCTGGATTCTAGTGCTAATT
TGTTAAAGATTACAAAGACGTATTTAGAATTGGCTCGTCGTGTGGAGAAAGTTTATGTTTATGCTCACATGAAAAATGAT
CAAGACACTACCGTTGCCAAGTATCAAGAATACCAAGCTAAGGCTTCAGGTTTGTATGCCAAATTTAGTGAGGTCTTTTC
ATTCTATGATCCAGAAGTAATGACGCTTAGTCAAGAGGATTACCAAACTTTCCTTACGGAAACCCCTGAGTTGAAAGGGT
ATAATCATTTCTTTGACAAATTATTCCAAGCACGCGAACATGTTCTCAGTCAAGCGGAAGAGGAATTATTAGCAGGGGCT
CAAGAAATTTTTAATGGTGCGGAAGAAACCTTTAGTATTCTTGATAATGCGGACATTGTTTTTCCGACGGTCAAAAATGA
TAAAGGAGAAGACGTTGAATTAACCCATGGTAATTTCATTAGCTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTATGAGGCAATGTATAGCACTTATGAGCAGTTCCAACATACTTATGCAAAAACCTTACAGACAAATGTGAAGGTTCAA
AACTACAAGGCGCGTGTTCATAAATATAATTCAGCCCGTCAGGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
TGATACCTTGTTAGAAACGGTTAATAAACATTTGCCGCTGTTACATCGTTATTTGAAATTGCGTCAAGAGGTTCTTGGTT
TAGATGAATTGAAGATGTATGATGTTTACACACCGCTATCTGAAACAGATTTGGCTATTGGTTATGATGAGGCTTTGGAA
AAGGCAGAGAAGGTTTTGGCCGTTTTTGGTAAAGATTATGCAGACCGTGTGCACCGTGCTTTTACTGAACGCTGGATTGA
TGTTCATGTCAATAAAGGAAAACGTTCTGGAGCTTACTCAGGAGGTTCTTATGACACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTGGATAATCTCTACACATTAGTTCATGAGACTGGTCACAGTTTGCATTCTACTTTTACGCGTGAAACA
CAGCCTTATGTGTATGGGGACTATAGTATTTTTTTGGCAGAAATTGCTTCAACGACGAATGAAAATATTATGACAGAAGC
TCTCTTAAACGAAGTTCAAGATGAGAAAGAACGTTTTGCGATTTTAAACCATTACCTTGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATTCACCAAGCTGATCAAAAAGGAGAAGTGTTAACAAGCGAATAC
CTTAACCAATTATACGCTGATTTAAATGAAAAATATTATGGTTTAAGTAAAGAGGATAATCATTTTATTCAGTATGAGTG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTACCAATATGCAACAGGTTTTGCAGCCGCAAGCTATTTAGCAG
ATAAGATTGTTCACGGAACACAAGATGATATTGATCATTACTTGGCCTATCTCAAGTCAGGAAATTCTGATTACCCACTT
GAAGTGATTGCTAAAGCAGGCGTTGATATGGCAAAAGGGGACTATTTGGAAGCTGCCTTTAAGGTCTTTGAAGAACGCTT
AATAGAACTCGAAGCCCTCGTTGCAAAGGGTGTTCACCGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717