Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GE023_RS02345 Genome accession   NZ_CP053789
Coordinates   456860..457897 (+) Length   345 a.a.
NCBI ID   WP_003044435.1    Uniprot ID   A0AAV3FT85
Organism   Streptococcus canis strain HL_98_2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 458147..459349 456860..457897 flank 250


Gene organization within MGE regions


Location: 456860..459349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS02345 (GE023_002345) sepM 456860..457897 (+) 1038 WP_003044435.1 SepM family pheromone-processing serine protease Regulator
  GE023_RS02350 (GE023_002350) - 458147..459349 (-) 1203 WP_050319943.1 IS110 family transposase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37690.50 Da        Isoelectric Point: 9.7859

>NTDB_id=447152 GE023_RS02345 WP_003044435.1 456860..457897(+) (sepM) [Streptococcus canis strain HL_98_2]
MKIIKKIKWWLVSLFALVALLITLFFPLPYYVEMPGGAYDIRSVLQVNGKEDKGKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAIYQALTLANKPVTLDYKGVYVLDVSKDSTFKGALNLADTVTGVNDK
QFKSSTELVDYVSHLKLGDKVTVQFMSDSQPKSETGRIIKLKNGKNGIGIALTDHTKVRSEDKIAFSTQGVGGPSAGLMF
TLDIYDQIVKEDLRKGRIIAGTGTIGKHGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVDKALKKTHPKAISNYEEAKRA
AKQLKTKMKIVPVTNVQEALAYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=447152 GE023_RS02345 WP_003044435.1 456860..457897(+) (sepM) [Streptococcus canis strain HL_98_2]
ATGAAAATAATTAAAAAAATCAAATGGTGGCTGGTTAGCCTTTTTGCTCTAGTAGCTTTGCTGATTACCCTCTTTTTCCC
TCTACCTTATTACGTTGAAATGCCTGGCGGCGCTTATGATATTCGCTCTGTTTTACAAGTTAATGGAAAAGAAGATAAAG
GGAAGGGATCTTATCAATTTGTAGCCGTTAGCCTTAGCCGCGCCAGTTTGGCACAGTTATTGTATGCTTGGTTAACCCCT
TTTACCGAAATCAGTTCCGTTGAAGACACTACGGGTGGTTACAGTGATGCTGATTATATCCGCATTAACCAATTCTACAT
GGAAACCTCGCAAAATGCAGCGATCTATCAGGCATTAACCTTGGCGAACAAACCCGTTACGTTGGATTACAAAGGGGTTT
ACGTATTAGATGTTAGCAAAGACTCAACCTTCAAAGGTGCCTTGAATTTAGCAGATACTGTCACTGGTGTGAATGACAAG
CAATTTAAGAGTTCGACAGAGCTTGTGGACTATGTTTCTCATTTAAAACTTGGGGATAAAGTAACTGTTCAGTTTATGAG
TGATAGTCAGCCCAAGTCTGAGACAGGCCGTATTATTAAACTTAAAAACGGTAAAAATGGTATTGGGATTGCTCTTACAG
ACCATACTAAAGTTAGGTCAGAGGATAAGATCGCGTTTAGCACGCAAGGTGTTGGTGGTCCCAGTGCTGGTTTGATGTTT
ACCCTTGATATTTATGACCAAATTGTCAAGGAGGATCTTCGTAAAGGTCGTATCATCGCAGGTACAGGAACGATTGGCAA
ACATGGCGAAGTGGGAGATATTGGTGGCGCAGGCCTTAAAGTTGTGGCTGCCGCAGATGCTGGTGCTGAAATATTCTTTG
TTCCTAACAATCCTGTGGACAAGGCCTTAAAAAAAACGCATCCCAAAGCCATCAGCAACTATGAAGAAGCTAAGCGAGCA
GCTAAGCAATTAAAAACTAAAATGAAGATTGTGCCTGTGACCAATGTTCAGGAAGCTTTGGCTTATCTTCGGAAATGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-304)

PDZ domain (PDZ_2)

(130-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.884

100

0.719