Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   I5W22_RS02170 Genome accession   NZ_CP065431
Coordinates   428928..429704 (+) Length   258 a.a.
NCBI ID   WP_012774987.1    Uniprot ID   A0A0H3N2A2
Organism   Streptococcus suis strain YP20190405     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 423928..434704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5W22_RS10495 - 427050..427253 (-) 204 Protein_374 transposase -
  I5W22_RS02165 (I5W22_02165) rlmD 427538..428890 (-) 1353 WP_011922004.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  I5W22_RS02170 (I5W22_02170) recX 428928..429704 (+) 777 WP_012774987.1 recombination regulator RecX Regulator
  I5W22_RS02175 (I5W22_02175) - 429780..430313 (+) 534 WP_004194106.1 DUF402 domain-containing protein -
  I5W22_RS02180 (I5W22_02180) - 430371..430688 (+) 318 WP_004194104.1 DUF960 domain-containing protein -
  I5W22_RS02185 (I5W22_02185) - 430788..431519 (+) 732 WP_012774988.1 GntR family transcriptional regulator -
  I5W22_RS02190 (I5W22_02190) - 431659..432369 (-) 711 WP_004194099.1 GntR family transcriptional regulator -
  I5W22_RS02195 (I5W22_02195) - 432576..434348 (+) 1773 WP_011922008.1 glycoside hydrolase family 35 protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30372.90 Da        Isoelectric Point: 9.3979

>NTDB_id=447090 I5W22_RS02170 WP_012774987.1 428928..429704(+) (recX) [Streptococcus suis strain YP20190405]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSNYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKTLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYEAAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=447090 I5W22_RS02170 WP_012774987.1 428928..429704(+) (recX) [Streptococcus suis strain YP20190405]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTAATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAAACGCTGATTGATAAAAGACTGGCTGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGTTT
TTCTTATGAGGCGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.206

100

0.364