Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I5W22_RS01970 Genome accession   NZ_CP065431
Coordinates   395631..396248 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain YP20190405     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 390631..401248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5W22_RS01950 (I5W22_01950) - 391464..392297 (+) 834 WP_011921979.1 energy-coupling factor transporter transmembrane component T family protein -
  I5W22_RS01955 (I5W22_01955) - 392457..392660 (+) 204 WP_004195223.1 cold-shock protein -
  I5W22_RS01960 (I5W22_01960) rsmG 392702..393417 (-) 716 Protein_347 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  I5W22_RS01965 (I5W22_01965) pbp1a 393476..395650 (-) 2175 WP_014636231.1 penicillin-binding protein PBP1A -
  I5W22_RS01970 (I5W22_01970) recU 395631..396248 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  I5W22_RS01975 (I5W22_01975) - 396314..396853 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  I5W22_RS01980 (I5W22_01980) gpsB 396924..397259 (+) 336 WP_004194167.1 cell division regulator GpsB -
  I5W22_RS01990 (I5W22_01990) - 397816..398982 (+) 1167 WP_011921983.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I5W22_RS01995 (I5W22_01995) - 398992..400446 (+) 1455 WP_011921984.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=447085 I5W22_RS01970 WP_004194173.1 395631..396248(-) (recU) [Streptococcus suis strain YP20190405]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=447085 I5W22_RS01970 WP_004194173.1 395631..396248(-) (recU) [Streptococcus suis strain YP20190405]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473