Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   I5V48_RS11075 Genome accession   NZ_CP065430
Coordinates   2327005..2327454 (-) Length   149 a.a.
NCBI ID   WP_043025226.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2322005..2332454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS11060 (I5V48_11060) - 2322920..2323456 (-) 537 WP_153595832.1 hypothetical protein -
  I5V48_RS11065 (I5V48_11065) - 2323521..2325305 (-) 1785 WP_043025223.1 ABC transporter ATP-binding protein -
  I5V48_RS11070 (I5V48_11070) - 2325306..2327012 (-) 1707 WP_043025225.1 ABC transporter ATP-binding protein -
  I5V48_RS11075 (I5V48_11075) rcrR 2327005..2327454 (-) 450 WP_043025226.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I5V48_RS11080 (I5V48_11080) - 2327681..2328697 (+) 1017 WP_043025227.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  I5V48_RS11085 (I5V48_11085) galU 2328716..2329618 (+) 903 WP_043025228.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I5V48_RS11090 (I5V48_11090) - 2329638..2330315 (-) 678 WP_043025230.1 rhomboid family intramembrane serine protease -
  I5V48_RS11095 (I5V48_11095) - 2330299..2330841 (-) 543 WP_052496997.1 5-formyltetrahydrofolate cyclo-ligase -
  I5V48_RS11100 (I5V48_11100) - 2330882..2332009 (-) 1128 WP_043025232.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17308.78 Da        Isoelectric Point: 7.2017

>NTDB_id=447048 I5V48_RS11075 WP_043025226.1 2327005..2327454(-) (rcrR) [Streptococcus suis strain YZDH1]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSQVDKRYKQLVLTEKGQGKIGHLKAFHDEMHHSLFWGIQKEDFDLVRQVADQLKENIQHYKEKKHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=447048 I5V48_RS11075 WP_043025226.1 2327005..2327454(-) (rcrR) [Streptococcus suis strain YZDH1]
ATGGGACATACTATTGCAGATTTTAGGAACTTGCTCAATCAGATTGAACAAATCAGTGAAACCATTGCTAAAGAATACGA
TGTAGAGCACCTAGCTGGTCCACAGGGCTGGGCCTTGCGTTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCAGAATTAAAGATTTCCAAATCCGTTGCCAGCAATCTGGTCAAGCGAATGGAGAAAAATGGCTTTATCCAA
GTTCTGCCTTCTCAGGTTGACAAACGTTATAAGCAGTTGGTTTTGACAGAGAAAGGGCAAGGGAAGATCGGTCACCTGAA
AGCCTTTCATGATGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGATTTGGTTAGACAAGTAGCCG
ATCAATTAAAAGAAAATATTCAACACTATAAGGAGAAGAAACATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

46.099

94.631

0.436