Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I5V48_RS09370 Genome accession   NZ_CP065430
Coordinates   1989539..1990156 (+) Length   205 a.a.
NCBI ID   WP_024377451.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1984539..1995156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS09345 (I5V48_09345) - 1985349..1986803 (-) 1455 WP_043027129.1 cell division site-positioning protein MapZ family protein -
  I5V48_RS09350 (I5V48_09350) - 1986813..1987970 (-) 1158 WP_043033580.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I5V48_RS09360 (I5V48_09360) gpsB 1988528..1988863 (-) 336 WP_029185787.1 cell division regulator GpsB -
  I5V48_RS09365 (I5V48_09365) - 1988934..1989473 (-) 540 WP_004195215.1 DUF1273 domain-containing protein -
  I5V48_RS09370 (I5V48_09370) recU 1989539..1990156 (+) 618 WP_024377451.1 Holliday junction resolvase RecU Machinery gene
  I5V48_RS09375 (I5V48_09375) pbp1a 1990137..1992311 (+) 2175 WP_043024971.1 penicillin-binding protein PBP1A -
  I5V48_RS09380 (I5V48_09380) rsmG 1992370..1993083 (+) 714 WP_024377206.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  I5V48_RS09385 (I5V48_09385) tnpA 1993231..1993693 (-) 463 Protein_1833 IS200/IS605 family transposase -
  I5V48_RS09390 (I5V48_09390) - 1993879..1994082 (-) 204 WP_004195223.1 cold-shock protein -
  I5V48_RS09395 (I5V48_09395) - 1994242..1995075 (-) 834 WP_024386587.1 energy-coupling factor transporter transmembrane component T family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23747.37 Da        Isoelectric Point: 10.0312

>NTDB_id=447036 I5V48_RS09370 WP_024377451.1 1989539..1990156(+) (recU) [Streptococcus suis strain YZDH1]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHGIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=447036 I5V48_RS09370 WP_024377451.1 1989539..1990156(+) (recU) [Streptococcus suis strain YZDH1]
ATGGTCAATTATCCTCATAAGGTGTCCAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGGCATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTTGAGGCATACTTTCGACAG
GCGTCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
TATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTAAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473