Detailed information NTG0447020

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HPQ66_RS17345
• Genome accession: NZ_CP053764
• Coordinates: 3568091..3569236 (+)
• Length: 381 a.a.
• NCBI ID: WP_101562519.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain B268
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3563091..3574236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPQ66_RS17325 (HPQ66_17380)	-	3563988..3564416 (-)	429	WP_007407634.1	DUF1934 domain-containing protein	-
HPQ66_RS17330 (HPQ66_17385)	-	3564570..3565082 (+)	513	Protein_3378	bacteriocin biosynthesis protein AlbG	-
HPQ66_RS17335 (HPQ66_17390)	-	3565089..3566465 (-)	1377	WP_172615057.1	YncE family protein	-
HPQ66_RS17340 (HPQ66_17395)	-	3566505..3567860 (-)	1356	WP_172615058.1	YncE family protein	-
HPQ66_RS17345 (HPQ66_17400)	rapF	3568091..3569236 (+)	1146	WP_101562519.1	Rap family tetratricopeptide repeat protein	Regulator
HPQ66_RS17350 (HPQ66_17405)	-	3569220..3569339 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
HPQ66_RS17355 (HPQ66_17410)	speB	3569462..3570334 (-)	873	WP_003151054.1	agmatinase	-
HPQ66_RS17360 (HPQ66_17415)	speE	3570394..3571224 (-)	831	WP_003151052.1	spermidine synthase	-
HPQ66_RS17365 (HPQ66_17420)	-	3571424..3573496 (+)	2073	WP_031378562.1	transglycosylase domain-containing protein	-
HPQ66_RS17370 (HPQ66_17425)	-	3573521..3573952 (-)	432	WP_031378563.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45795.29 Da
• Isoelectric Point: 4.9327

>NTDB_id=447020 HPQ66_RS17345 WP_101562519.1 3568091..3569236(+) (rapF) [Bacillus velezensis strain B268]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDILI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=447020 HPQ66_RS17345 WP_101562519.1 3568091..3569236(+) (rapF) [Bacillus velezensis strain B268]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTTGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAGAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCACAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTGTATATGCCGGATCCAAGAGATATATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-254)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.604	100	0.706
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533