Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   I5V48_RS04590 Genome accession   NZ_CP065430
Coordinates   960130..960612 (-) Length   160 a.a.
NCBI ID   WP_043026302.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 955130..965612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS04565 (I5V48_04565) pheT 955179..957578 (+) 2400 WP_043026311.1 phenylalanine--tRNA ligase subunit beta -
  I5V48_RS04570 (I5V48_04570) - 957898..958153 (+) 256 Protein_879 DUF2087 domain-containing protein -
  I5V48_RS04575 (I5V48_04575) - 958174..958476 (-) 303 WP_043026308.1 hypothetical protein -
  I5V48_RS04580 (I5V48_04580) - 958674..959417 (+) 744 WP_043026306.1 polyphosphate polymerase domain-containing protein -
  I5V48_RS04585 (I5V48_04585) - 959404..960081 (+) 678 WP_197315150.1 DUF4956 domain-containing protein -
  I5V48_RS04590 (I5V48_04590) mutX 960130..960612 (-) 483 WP_043026302.1 NUDIX hydrolase Machinery gene
  I5V48_RS04595 (I5V48_04595) folE 960770..961333 (+) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  I5V48_RS04600 (I5V48_04600) folP 961342..962154 (+) 813 WP_043026300.1 dihydropteroate synthase -
  I5V48_RS04605 (I5V48_04605) folB 962147..962509 (+) 363 WP_043026298.1 dihydroneopterin aldolase -
  I5V48_RS04610 (I5V48_04610) folK 962506..963006 (+) 501 WP_043026296.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I5V48_RS04615 (I5V48_04615) - 963030..964340 (+) 1311 WP_043026294.1 GntP family permease -
  I5V48_RS04620 (I5V48_04620) - 964411..965559 (-) 1149 WP_043026292.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18587.90 Da        Isoelectric Point: 4.4960

>NTDB_id=447005 I5V48_RS04590 WP_043026302.1 960130..960612(-) (mutX) [Streptococcus suis strain YZDH1]
MTKKTVQLATICYIDNGKEYLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGNLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=447005 I5V48_RS04590 WP_043026302.1 960130..960612(-) (mutX) [Streptococcus suis strain YZDH1]
ATGACCAAAAAAACTGTCCAACTGGCTACGATTTGCTACATTGATAATGGTAAGGAATATCTTCTCCTTCATCGAAACAA
GAAAGAAAATGACGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTGGAGCCTGGTGAAACACCGCAAGCTTGTG
CCATTCGCGAGGTCTTTGAGGAAACTGGACTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATTACGGGTTTTGAAGGAAATCTTATTGATTGCAACGAAGGCGA
TTTAGAATGGGTTCCTTATGACCAAGTGCTCTCCAAACCAACCTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTATAGCGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775