Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HPQ66_RS12645 Genome accession   NZ_CP053764
Coordinates   2643820..2644572 (-) Length   250 a.a.
NCBI ID   WP_071391543.1    Uniprot ID   -
Organism   Bacillus velezensis strain B268     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2638820..2649572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS12620 (HPQ66_12660) mreC 2639256..2640119 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  HPQ66_RS12625 (HPQ66_12665) mreB 2640150..2641163 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HPQ66_RS12630 (HPQ66_12670) radC 2641255..2641950 (-) 696 WP_007408165.1 DNA repair protein RadC -
  HPQ66_RS12635 (HPQ66_12675) - 2641982..2642551 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  HPQ66_RS12640 (HPQ66_12680) - 2642692..2643693 (-) 1002 WP_146277259.1 SPOR domain-containing protein -
  HPQ66_RS12645 (HPQ66_12685) comC 2643820..2644572 (-) 753 WP_071391543.1 A24 family peptidase Machinery gene
  HPQ66_RS12650 (HPQ66_12690) - 2644712..2646004 (-) 1293 WP_172614871.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HPQ66_RS12655 (HPQ66_12695) - 2646063..2648705 (-) 2643 WP_071391541.1 valine--tRNA ligase -
  HPQ66_RS12660 (HPQ66_12700) - 2649158..2649349 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27150.83 Da        Isoelectric Point: 9.2521

>NTDB_id=447003 HPQ66_RS12645 WP_071391543.1 2643820..2644572(-) (comC) [Bacillus velezensis strain B268]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPIVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=447003 HPQ66_RS12645 WP_071391543.1 2643820..2644572(-) (comC) [Bacillus velezensis strain B268]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCATCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGTCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584