Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HPQ66_RS11780 Genome accession   NZ_CP053764
Coordinates   2487591..2488358 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain B268     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2482591..2493358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS11760 (HPQ66_11800) - 2482793..2483605 (-) 813 WP_172614834.1 pyruvate, water dikinase regulatory protein -
  HPQ66_RS11765 (HPQ66_11805) ccpN 2483631..2484269 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  HPQ66_RS11770 (HPQ66_11810) glyS 2484370..2486409 (-) 2040 WP_077722605.1 glycine--tRNA ligase subunit beta -
  HPQ66_RS11775 (HPQ66_11815) glyQ 2486402..2487289 (-) 888 WP_172614835.1 glycine--tRNA ligase subunit alpha -
  HPQ66_RS11780 (HPQ66_11820) recO 2487591..2488358 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  HPQ66_RS11785 (HPQ66_11825) - 2488395..2488538 (-) 144 WP_007408286.1 YqzL family protein -
  HPQ66_RS11790 (HPQ66_11830) era 2488694..2489599 (-) 906 WP_007408285.1 GTPase Era -
  HPQ66_RS11795 (HPQ66_11835) - 2489580..2489990 (-) 411 WP_003152976.1 cytidine deaminase -
  HPQ66_RS11800 (HPQ66_11840) - 2490114..2490488 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  HPQ66_RS11805 (HPQ66_11845) ybeY 2490469..2490942 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  HPQ66_RS11810 (HPQ66_11850) - 2490943..2493075 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=446996 HPQ66_RS11780 WP_003152982.1 2487591..2488358(-) (recO) [Bacillus velezensis strain B268]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=446996 HPQ66_RS11780 WP_003152982.1 2487591..2488358(-) (recO) [Bacillus velezensis strain B268]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894