Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HPQ66_RS10210 Genome accession   NZ_CP053764
Coordinates   2156609..2157217 (+) Length   202 a.a.
NCBI ID   WP_172615155.1    Uniprot ID   -
Organism   Bacillus velezensis strain B268     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2151609..2162217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS10170 (HPQ66_10210) - 2152662..2153168 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  HPQ66_RS10175 (HPQ66_10215) - 2153307..2153720 (+) 414 WP_076851379.1 hypothetical protein -
  HPQ66_RS10180 (HPQ66_10220) - 2153750..2154184 (-) 435 WP_101562217.1 YppG family protein -
  HPQ66_RS10185 (HPQ66_10225) - 2154371..2154553 (+) 183 WP_003153532.1 YppF family protein -
  HPQ66_RS10190 (HPQ66_10230) - 2154592..2154960 (-) 369 WP_003153529.1 YppE family protein -
  HPQ66_RS10195 (HPQ66_10235) - 2155006..2155251 (-) 246 WP_039063257.1 DUF5446 family protein -
  HPQ66_RS10200 (HPQ66_10240) sspM 2155457..2155561 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  HPQ66_RS10205 (HPQ66_10245) - 2155605..2156567 (-) 963 WP_032861546.1 DUF2515 domain-containing protein -
  HPQ66_RS10210 (HPQ66_10250) recU 2156609..2157217 (+) 609 WP_172615155.1 Holliday junction resolvase RecU Machinery gene
  HPQ66_RS10215 (HPQ66_10255) - 2157256..2160039 (+) 2784 WP_172614775.1 PBP1A family penicillin-binding protein -
  HPQ66_RS10220 (HPQ66_10260) - 2160117..2160608 (-) 492 WP_172614776.1 YpoC family protein -
  HPQ66_RS10225 (HPQ66_10265) nth 2160605..2161264 (-) 660 WP_003153517.1 endonuclease III -
  HPQ66_RS10230 (HPQ66_10270) dnaD 2161283..2161981 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23752.93 Da        Isoelectric Point: 9.6795

>NTDB_id=446985 HPQ66_RS10210 WP_172615155.1 2156609..2157217(+) (recU) [Bacillus velezensis strain B268]
MIRYPNGKTFKPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=446985 HPQ66_RS10210 WP_172615155.1 2156609..2157217(+) (recU) [Bacillus velezensis strain B268]
GTGATTCGGTACCCGAATGGAAAAACTTTTAAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891