Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I5V48_RS00205 Genome accession   NZ_CP065430
Coordinates   28766..29548 (+) Length   260 a.a.
NCBI ID   WP_043025320.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23766..34548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS00180 (I5V48_00180) mreC 23776..24612 (+) 837 WP_170238131.1 rod shape-determining protein MreC -
  I5V48_RS00185 (I5V48_00185) mreD 24602..25117 (+) 516 WP_002935339.1 rod shape-determining protein MreD -
  I5V48_RS00190 (I5V48_00190) pcsB 25202..26443 (+) 1242 WP_172045728.1 peptidoglycan hydrolase PcsB -
  I5V48_RS00195 (I5V48_00195) - 26546..27514 (+) 969 WP_172045730.1 ribose-phosphate diphosphokinase -
  I5V48_RS00200 (I5V48_00200) - 27601..28779 (+) 1179 WP_172045732.1 pyridoxal phosphate-dependent aminotransferase -
  I5V48_RS00205 (I5V48_00205) recO 28766..29548 (+) 783 WP_043025320.1 DNA repair protein RecO Machinery gene
  I5V48_RS00210 (I5V48_00210) plsX 29545..30552 (+) 1008 WP_043025318.1 phosphate acyltransferase PlsX -
  I5V48_RS00215 (I5V48_00215) - 30545..30793 (+) 249 WP_043025315.1 phosphopantetheine-binding protein -
  I5V48_RS00220 (I5V48_00220) purC 30911..31618 (+) 708 WP_043025313.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30413.87 Da        Isoelectric Point: 5.0720

>NTDB_id=446960 I5V48_RS00205 WP_043025320.1 28766..29548(+) (recO) [Streptococcus suis strain YZDH1]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQAFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECVFCHRVGL
PFDYSYKYSGVLCPQHYQEDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKQKLRLFIDQVYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=446960 I5V48_RS00205 WP_043025320.1 28766..29548(+) (recO) [Streptococcus suis strain YZDH1]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGGCATTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTATTGGGTCGATTTGGGATCAGTCTGAATTTTCATGAGTGTGTTTTTTGTCATAGGGTTGGTCTG
CCTTTTGATTATTCTTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAGGAAGATGAGAGGCGGGCTTATCTGGA
CCCTAATGTTCCCTACCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATAAAGCCTGAGA
TGAAGCAGAAGTTACGGCTTTTTATCGACCAAGTTTATGAAGAATATGTGGGCATCCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

70.518

96.538

0.681