Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   C270_RS07625 Genome accession   NC_018673
Coordinates   1550450..1552267 (-) Length   605 a.a.
NCBI ID   WP_014974993.1    Uniprot ID   K0DBY3
Organism   Leuconostoc carnosum JB16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1545450..1557267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C270_RS07585 (C270_07340) argB 1545859..1546596 (+) 738 WP_041773239.1 acetylglutamate kinase -
  C270_RS07590 (C270_07345) - 1546621..1547742 (+) 1122 WP_014974988.1 acetylornithine/succinylornithine family transaminase -
  C270_RS07600 (C270_07350) - 1547997..1548284 (+) 288 WP_014974989.1 hypothetical protein -
  C270_RS07605 (C270_07355) - 1548325..1548699 (+) 375 WP_014974990.1 TIGR02328 family protein -
  C270_RS07610 (C270_07360) - 1548902..1549141 (+) 240 WP_014974991.1 hypothetical protein -
  C270_RS07615 (C270_07365) - 1549168..1549935 (-) 768 WP_041773240.1 helix-turn-helix transcriptional regulator -
  C270_RS07625 (C270_07370) recQ 1550450..1552267 (-) 1818 WP_014974993.1 DNA helicase RecQ Machinery gene
  C270_RS07630 (C270_07375) - 1552362..1553018 (-) 657 WP_014974994.1 histidine phosphatase family protein -
  C270_RS07635 (C270_07380) - 1553186..1554010 (-) 825 WP_014974995.1 LysR family transcriptional regulator -
  C270_RS07640 (C270_07385) - 1554153..1555151 (+) 999 WP_014974996.1 putative sulfate exporter family transporter -
  C270_RS07645 (C270_07390) - 1555248..1555586 (+) 339 WP_014974997.1 hypothetical protein -
  C270_RS07650 (C270_07395) - 1555616..1556971 (-) 1356 WP_014974998.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 68181.40 Da        Isoelectric Point: 6.2467

>NTDB_id=44692 C270_RS07625 WP_014974993.1 1550450..1552267(-) (recQ) [Leuconostoc carnosum JB16]
MQTPREILKEVFGYDDFRAGQLDIIEKVLAHKHTLAIMPTGGGKSITYQLPALMFEGLTLVISPLISLMKDQVDGLNTMG
IDATFLNSTLTGQEQAQRMSDIRAGLYKMLYVSPERLEIPSFFGFIQQLPIDLVAIDEAHVMSQWGHDFRPSYLNILPLL
HEIPGSPAVLGLTATATERVRESLQQLLDVSDEDTVLTGFARDNLALKIMHYVDKRRYVQDYLRENSEQSGIIYAATRKQ
VDELYEFLHKKGVKVGRYHAGLPEHERQAMQEAFLYDDVQVIVATNAFGMGINKPNVRFVIHYSVPGNIEAYYQEIGRAG
RDGLPAEAVLLYAPQDMHLQEFFVQKSGGSEEYKQNEYNKIREMNAFANTQTCLPRYLLGYFGEIVDQDCKMCSNCLDSR
EMVDVTTDTQKVLANVMRMNQSFGKTMVAKILKGSHDATVKKYDYLTQLPTYGLMKAHTLKDLTAFIDFLTADGYLKTAG
GEFPVLKVTEIGARVLKGQLVVEKRLNRSVVAQQKVVTSAAKGLKLSDDDNQLFARLKAKRLELAREAGIPPFLIFSDKT
LMNMAILRPKTDEEFLALSGVGEKKFEIYHNDFAHVLADDLQVRE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=44692 C270_RS07625 WP_014974993.1 1550450..1552267(-) (recQ) [Leuconostoc carnosum JB16]
ATGCAAACACCGCGTGAGATTTTAAAAGAAGTATTTGGGTACGATGATTTTCGTGCAGGACAATTAGATATTATTGAAAA
AGTGTTAGCTCATAAACATACATTGGCAATTATGCCAACTGGTGGTGGTAAATCGATCACGTATCAATTACCAGCACTGA
TGTTTGAGGGGTTGACTTTAGTTATTTCACCATTAATTTCTTTGATGAAAGACCAGGTTGATGGTCTTAATACGATGGGG
ATTGATGCAACTTTTCTCAATTCTACATTAACAGGACAAGAGCAGGCGCAACGCATGTCAGATATTCGTGCGGGTCTCTA
TAAAATGTTGTATGTATCACCAGAGCGCTTGGAAATTCCAAGTTTTTTTGGTTTTATTCAACAGTTGCCAATTGATTTGG
TTGCGATTGATGAAGCGCACGTCATGTCACAATGGGGGCATGATTTTCGACCTAGTTATTTAAATATTTTACCATTATTA
CATGAAATTCCTGGTTCACCAGCTGTTTTAGGATTAACTGCAACAGCTACTGAACGTGTCCGTGAGAGCTTGCAGCAGTT
ACTTGATGTCTCTGACGAAGATACTGTGCTGACAGGTTTTGCTCGTGATAATCTTGCGCTTAAAATCATGCATTATGTTG
ACAAACGACGTTACGTGCAAGATTATTTACGTGAAAATAGTGAGCAAAGTGGTATTATTTATGCGGCTACACGTAAACAA
GTTGATGAATTATATGAATTTTTACATAAAAAAGGGGTTAAAGTTGGTCGTTATCATGCAGGGTTACCTGAACATGAACG
GCAAGCCATGCAGGAAGCATTCTTATATGACGATGTGCAGGTAATCGTCGCAACCAATGCTTTTGGTATGGGCATTAATA
AGCCCAATGTGCGCTTTGTTATCCACTACTCTGTACCAGGAAATATCGAAGCCTATTATCAAGAAATTGGGCGCGCTGGA
CGTGATGGCTTGCCTGCTGAAGCTGTACTATTATATGCACCACAAGATATGCACTTACAAGAATTTTTTGTACAAAAATC
TGGTGGTTCAGAAGAATATAAACAAAATGAGTATAATAAAATCCGAGAAATGAATGCATTTGCTAATACGCAAACTTGTT
TACCACGCTATTTATTAGGTTATTTTGGTGAAATCGTTGACCAAGATTGCAAGATGTGTTCGAACTGCTTAGATTCTCGC
GAGATGGTTGATGTGACGACAGATACCCAAAAGGTCCTGGCCAATGTGATGCGTATGAATCAGAGCTTTGGTAAAACAAT
GGTTGCCAAAATATTAAAGGGTTCACATGATGCCACTGTGAAAAAGTATGATTATTTGACCCAATTACCCACATATGGCT
TGATGAAAGCACATACGTTGAAAGATTTAACGGCTTTTATTGATTTTCTAACGGCTGATGGTTACTTGAAAACAGCGGGT
GGCGAGTTCCCAGTGCTTAAGGTGACAGAAATCGGTGCTCGTGTGCTTAAAGGACAATTGGTTGTGGAAAAACGACTGAA
TCGTTCTGTGGTGGCACAGCAAAAAGTAGTTACGTCTGCTGCCAAAGGGTTGAAATTATCTGATGATGATAATCAATTAT
TTGCCAGGTTGAAGGCAAAAAGGCTGGAATTGGCTCGAGAGGCAGGTATTCCACCGTTTCTTATTTTTTCGGATAAGACT
TTGATGAATATGGCAATTCTCAGGCCAAAAACAGATGAAGAATTTTTGGCACTTTCTGGTGTTGGTGAAAAGAAGTTTGA
AATCTATCATAACGACTTTGCTCATGTGCTTGCAGATGACTTACAAGTACGAGAATAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-322)

HRDC domain (HRDC)

(531-594)

DEAD/DEAH box helicase (DEAD)

(20-181)

RQC domain (RQC)

(400-505)

RecQ zinc-binding (RecQ_Zn_bind)

(334-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0DBY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

45.763

97.521

0.446

Multiple sequence alignment