Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HQN78_RS13320 Genome accession   NZ_CP053750
Coordinates   2874328..2875749 (+) Length   473 a.a.
NCBI ID   WP_235084266.1    Uniprot ID   -
Organism   Chromobacterium sp. Beijing     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869328..2880749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS13295 (HQN78_13155) - 2870959..2871939 (+) 981 WP_227107058.1 KpsF/GutQ family sugar-phosphate isomerase -
  HQN78_RS13300 (HQN78_13160) - 2871965..2872489 (+) 525 WP_107798247.1 HAD family hydrolase -
  HQN78_RS13305 (HQN78_13165) lptC 2872486..2873055 (+) 570 WP_107798246.1 LPS export ABC transporter periplasmic protein LptC -
  HQN78_RS13310 (HQN78_13170) lptA 2873045..2873599 (+) 555 WP_107798245.1 lipopolysaccharide transport periplasmic protein LptA -
  HQN78_RS13315 (HQN78_13175) lptB 2873596..2874324 (+) 729 WP_227107056.1 LPS export ABC transporter ATP-binding protein -
  HQN78_RS13320 (HQN78_13180) rpoN/rpoN1 2874328..2875749 (+) 1422 WP_235084266.1 RNA polymerase factor sigma-54 Machinery gene
  HQN78_RS13325 (HQN78_13185) hpf 2875817..2876131 (+) 315 WP_019104259.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HQN78_RS13330 (HQN78_13190) ptsN 2876253..2876714 (+) 462 WP_107798242.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HQN78_RS13335 (HQN78_13195) hprK 2876707..2877663 (+) 957 WP_019104261.1 HPr(Ser) kinase/phosphatase -
  HQN78_RS13340 (HQN78_13200) rapZ 2877644..2878486 (+) 843 WP_107798241.1 RNase adapter RapZ -
  HQN78_RS13345 (HQN78_13205) - 2878521..2879156 (+) 636 WP_107798240.1 flavin prenyltransferase UbiX -
  HQN78_RS13350 (HQN78_13210) - 2879202..2880692 (+) 1491 WP_107798239.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52067.12 Da        Isoelectric Point: 4.7110

>NTDB_id=446911 HQN78_RS13320 WP_235084266.1 2874328..2875749(+) (rpoN/rpoN1) [Chromobacterium sp. Beijing]
MKQTLQLKVSQQLTLTPQLQQSIKLLQMSTLDLQTEVERFLLDNPLLERGDEAPQGEAPDAAAQEPEAPAESRDDASGDD
GERGAETGELSDWGSGGRRGDGDDELDPMLNVPCPISLREHLLAQLGEVALPTRDQAIVQLLIEELDDDGYLGQTLEDIA
SHLPLELEIEADELMIGLRLLQQFDPPGVGARSLPEALALQLQRLDPDEPQRGLALAIVRDHLALLGNRDYTRLKKQLGV
DDAALRAAQALIARLNPRPTAGFGASDTQYVIPDVSVRKRKGRWVAALNGGAVPRLRVNQMYARLLAENRGGNGEMSSRL
QEAKWLVKNIQQRFDTILKVAEAIVERQQSFFEHGEVAMRPLILRDIADELGLHESTVSRVTTQKYLLCPRGLFELKYFF
GSALETDSGGECSATAIKAHIRSLIDAESPSKPLSDSALVEALAKQGIQVARRTIAKYREAMQIPPVNQRKTL

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=446911 HQN78_RS13320 WP_235084266.1 2874328..2875749(+) (rpoN/rpoN1) [Chromobacterium sp. Beijing]
ATGAAACAGACACTTCAGCTCAAGGTATCGCAGCAGCTGACCCTGACGCCGCAGCTGCAGCAATCGATCAAGCTGCTGCA
GATGTCCACCCTCGACCTGCAGACCGAAGTCGAGCGCTTCTTGCTGGACAATCCCTTGCTGGAGCGCGGCGACGAAGCGC
CGCAGGGCGAAGCGCCGGACGCCGCCGCCCAGGAACCGGAGGCCCCGGCGGAAAGCCGCGACGACGCCTCCGGCGACGAC
GGCGAACGCGGCGCGGAGACCGGCGAACTGAGCGACTGGGGCAGCGGCGGACGCCGCGGCGACGGCGACGACGAGCTGGA
CCCGATGCTGAACGTGCCCTGTCCTATCAGCCTGCGCGAGCACCTGCTGGCGCAGTTGGGCGAAGTGGCGCTGCCTACGC
GCGATCAGGCCATCGTCCAGCTGCTGATTGAAGAGCTGGACGACGACGGCTATCTGGGCCAGACGCTGGAAGACATCGCC
AGCCACCTGCCGCTGGAACTGGAAATCGAGGCCGACGAGCTGATGATAGGCCTGCGCCTGCTGCAGCAGTTCGACCCGCC
CGGCGTCGGCGCGCGTTCGCTGCCGGAAGCGCTGGCGCTGCAATTGCAGCGGCTGGACCCGGACGAGCCGCAGCGCGGCC
TGGCGCTGGCCATCGTTCGCGACCACCTGGCCTTGCTGGGCAACCGCGACTACACCCGGCTGAAAAAACAGCTGGGCGTG
GACGACGCCGCGCTGCGCGCCGCCCAGGCGCTGATCGCCCGCCTCAACCCCCGCCCCACCGCCGGTTTCGGCGCCAGCGA
CACCCAGTACGTGATCCCCGACGTCTCGGTCAGAAAACGCAAGGGACGCTGGGTGGCCGCCCTCAACGGCGGCGCCGTGC
CTCGCTTGCGCGTCAACCAGATGTACGCGCGGCTGCTGGCGGAAAACCGCGGCGGCAACGGCGAAATGTCCTCGCGGCTG
CAGGAGGCCAAATGGCTGGTGAAGAACATCCAGCAGCGATTTGACACTATCCTGAAAGTGGCGGAAGCTATCGTTGAACG
GCAGCAATCGTTCTTTGAACACGGCGAAGTGGCCATGCGCCCGCTGATTCTGCGCGACATCGCGGACGAGCTGGGCCTGC
ATGAATCCACGGTGTCCCGGGTCACCACCCAGAAATACCTGCTCTGCCCGCGCGGCCTGTTCGAGCTCAAGTATTTCTTC
GGCAGCGCGCTGGAAACCGACAGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCCCACATCCGCAGCCTGATAGACGC
CGAATCGCCGAGCAAACCGCTGTCCGACAGCGCCCTGGTCGAAGCGCTGGCCAAACAGGGAATACAAGTTGCCAGACGCA
CGATAGCCAAGTATCGTGAAGCCATGCAGATACCGCCGGTCAACCAGCGCAAGACGCTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(316-471)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.789

100

0.56