Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HQN78_RS03240 Genome accession   NZ_CP053750
Coordinates   658727..660088 (+) Length   453 a.a.
NCBI ID   WP_227107748.1    Uniprot ID   -
Organism   Chromobacterium sp. Beijing     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 653727..665088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS03215 (HQN78_03150) hpnC 654292..655104 (+) 813 WP_235087871.1 squalene synthase HpnC -
  HQN78_RS03220 (HQN78_03155) hpnD 655182..656027 (+) 846 WP_107801710.1 presqualene diphosphate synthase HpnD -
  HQN78_RS03225 (HQN78_03160) hpnE 656035..657303 (+) 1269 WP_235087874.1 hydroxysqualene dehydroxylase HpnE -
  HQN78_RS03230 (HQN78_03165) - 657365..658120 (+) 756 WP_227107746.1 SDR family oxidoreductase -
  HQN78_RS03235 (HQN78_03170) - 658136..658699 (+) 564 WP_107798718.1 hypothetical protein -
  HQN78_RS03240 (HQN78_03175) radA 658727..660088 (+) 1362 WP_227107748.1 DNA repair protein RadA Machinery gene
  HQN78_RS03245 (HQN78_03180) - 660171..660731 (+) 561 WP_107798720.1 sigma-70 family RNA polymerase sigma factor -
  HQN78_RS03250 (HQN78_03185) - 660728..660907 (+) 180 WP_107798721.1 zf-HC2 domain-containing protein -
  HQN78_RS03255 (HQN78_03190) - 661024..661383 (-) 360 WP_235087876.1 DUF2325 domain-containing protein -
  HQN78_RS03260 (HQN78_03195) - 662426..664636 (+) 2211 WP_235087878.1 TonB-dependent receptor domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48952.28 Da        Isoelectric Point: 6.8174

>NTDB_id=446903 HQN78_RS03240 WP_227107748.1 658727..660088(+) (radA) [Chromobacterium sp. Beijing]
MAKIKTVFSCAECGGQTPKWQGQCPHCNAWNTLTEAVQAAPAANARFQSWSDSATQVQKLSDVQTEEVPRDPSGIDELDR
VLGGGVVRGAVILIGGDPGIGKSTLLLQALSEIGARRKVLYVSGEESPQQIALRATRLAVATERVNLLAEIRLEAILETL
KREQPEVAVIDSIQTLYTDQVTSAPGSVSQVRECAAQLTRMAKQTGITILLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSNYRMIRAIKNRFGAVNELGVFVMTDRGLKGVSNPSAIFLSSYRDDVSGSCVLVTQEGSRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKPLPEKLVVFGEVGLAGEV
RPVARGQERLKEAAKLGFTRAIVPQANSPRQPIEGLRVIAVERLDQAVEFCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=446903 HQN78_RS03240 WP_227107748.1 658727..660088(+) (radA) [Chromobacterium sp. Beijing]
ATGGCAAAAATCAAAACCGTATTCAGTTGCGCCGAGTGCGGCGGTCAAACGCCCAAATGGCAGGGCCAATGCCCGCATTG
CAACGCCTGGAACACGCTGACCGAGGCGGTGCAGGCCGCGCCGGCGGCCAACGCCCGTTTCCAGTCCTGGAGCGACAGCG
CCACCCAGGTGCAAAAGCTGTCCGATGTGCAAACCGAGGAAGTGCCGCGCGACCCGTCCGGCATCGACGAGCTGGACCGG
GTGCTGGGCGGCGGCGTGGTGCGCGGCGCGGTGATCCTGATCGGCGGCGATCCGGGCATCGGCAAATCCACGCTATTGCT
GCAAGCGCTGTCCGAAATTGGCGCGCGCCGCAAAGTGCTCTATGTGTCCGGCGAGGAATCGCCGCAGCAGATCGCGCTGC
GCGCCACCCGTTTGGCGGTGGCCACCGAGCGCGTCAACCTGCTGGCGGAAATCCGGCTGGAAGCCATCCTGGAAACGCTG
AAGCGCGAGCAGCCGGAAGTGGCGGTGATCGACTCCATCCAGACCCTGTACACCGACCAAGTGACCTCGGCGCCCGGCTC
GGTGTCCCAGGTGCGAGAATGCGCGGCGCAGCTGACGCGCATGGCCAAGCAGACCGGCATCACCATCCTGCTGGTGGGAC
ACGTCACCAAGGAGGGCTCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGCGAT
TCCCACTCCAATTACCGGATGATACGCGCGATCAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGTGATGAC
GGACCGCGGCCTCAAGGGCGTGTCCAATCCCTCGGCCATCTTCCTGTCCTCTTACCGCGACGATGTGTCCGGCTCCTGCG
TGCTGGTCACCCAGGAGGGCAGCCGGCCCTTGCTGGTGGAAATCCAGGCCTTGGTGGACGACTGCCACGGCTTCCAGCCC
AAGCGCCTGACCGTGGGCCTGGAGCAGAACCGCCTGGCCATGTTGCTGGCGGTGCTGCACCGCCACGGCGGCGTCGCCTG
CTTCGATCAGGACGTGTTCCTCAACGCGGTGGGCGGGGTCAAGATCAACGAACCGGCGGCCGATTTGGCCATCATCCTGG
CCATGGTGTCCTCCTTGCGCAACAAGCCCTTGCCGGAAAAGCTGGTGGTGTTCGGCGAAGTGGGCCTGGCCGGCGAGGTG
CGCCCGGTGGCGCGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCTGGGCTTCACCCGCGCCATCGTGCCGCAGGCCAA
CAGCCCGCGCCAGCCGATAGAAGGGCTGCGGGTGATCGCGGTGGAGCGCCTGGATCAGGCGGTGGAATTCTGCCGCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.78

100

0.499
  radA Streptococcus mitis NCTC 12261

47.333

99.338

0.47
  radA Streptococcus pneumoniae Rx1

49.176

93.819

0.461
  radA Streptococcus pneumoniae D39

49.176

93.819

0.461
  radA Streptococcus pneumoniae R6

49.176

93.819

0.461
  radA Streptococcus pneumoniae TIGR4

49.176

93.819

0.461
  radA Streptococcus mitis SK321

49.176

93.819

0.461