Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HPQ68_RS12400 Genome accession   NZ_CP053748
Coordinates   2744752..2745153 (+) Length   133 a.a.
NCBI ID   WP_050411572.1    Uniprot ID   -
Organism   Massilia sp. erpn     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2739752..2750153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ68_RS12375 (HPQ68_12330) - 2740528..2741028 (-) 501 WP_255757948.1 hypothetical protein -
  HPQ68_RS12380 (HPQ68_12335) - 2741098..2742138 (-) 1041 WP_255757949.1 hypothetical protein -
  HPQ68_RS12385 (HPQ68_12340) hemL 2742312..2743598 (-) 1287 WP_255757950.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HPQ68_RS12390 (HPQ68_12345) - 2743606..2744442 (-) 837 WP_176347238.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  HPQ68_RS12395 (HPQ68_12350) - 2744538..2744690 (+) 153 WP_255758279.1 rubredoxin -
  HPQ68_RS12400 (HPQ68_12355) pilG 2744752..2745153 (+) 402 WP_050411572.1 PleD family two-component system response regulator Regulator
  HPQ68_RS12405 (HPQ68_12360) - 2745170..2745535 (+) 366 WP_176347237.1 response regulator transcription factor -
  HPQ68_RS12410 (HPQ68_12365) - 2745537..2746097 (+) 561 WP_255757951.1 chemotaxis protein CheW -
  HPQ68_RS12415 (HPQ68_12370) - 2746146..2748458 (+) 2313 WP_255757952.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14347.55 Da        Isoelectric Point: 7.3215

>NTDB_id=446890 HPQ68_RS12400 WP_050411572.1 2744752..2745153(+) (pilG) [Massilia sp. erpn]
MTTTPQATGLKIMVIDDSSTIRRSAEIFLSQAGYQVLLAEDGFDALAKISDHHPDLIFCDILMPRLDGYQTCALIKKSTR
FHTTPVLMLSSKDGLFDRARGAMVGSAAYLTKPFTKDSLLAAVREHTAGAAGA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=446890 HPQ68_RS12400 WP_050411572.1 2744752..2745153(+) (pilG) [Massilia sp. erpn]
ATGACGACTACGCCGCAAGCGACAGGTTTGAAAATCATGGTGATCGACGATAGCAGCACCATCCGCCGTTCCGCCGAGAT
TTTCCTGAGCCAGGCCGGCTACCAGGTGCTGCTGGCCGAAGACGGCTTCGACGCCCTAGCCAAGATCAGCGACCACCACC
CGGACCTGATCTTCTGCGACATCCTGATGCCGCGCCTGGACGGTTACCAGACCTGCGCCTTGATCAAGAAAAGCACGCGT
TTTCACACCACCCCGGTGCTGATGCTGTCCTCCAAGGACGGCTTGTTCGACCGCGCGCGCGGCGCCATGGTCGGCTCGGC
GGCGTATCTGACCAAACCTTTTACCAAAGACAGCCTGCTGGCGGCGGTGCGCGAGCACACGGCCGGCGCGGCAGGCGCAT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.5

90.226

0.564