Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HPQ68_RS03250 Genome accession   NZ_CP053748
Coordinates   726100..727164 (+) Length   354 a.a.
NCBI ID   WP_255756436.1    Uniprot ID   -
Organism   Massilia sp. erpn     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721100..732164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ68_RS03235 (HPQ68_03230) - 722310..722861 (-) 552 WP_255756433.1 hypothetical protein -
  HPQ68_RS03240 (HPQ68_03235) - 723025..724107 (-) 1083 WP_255756434.1 porin -
  HPQ68_RS03245 (HPQ68_03240) - 725020..725970 (+) 951 WP_255756435.1 MerR family transcriptional regulator -
  HPQ68_RS03250 (HPQ68_03245) pilA 726100..727164 (+) 1065 WP_255756436.1 signal recognition particle-docking protein FtsY Machinery gene
  HPQ68_RS03255 (HPQ68_03250) - 727171..727830 (+) 660 WP_255756437.1 cell division ATP-binding protein FtsE -
  HPQ68_RS03260 (HPQ68_03255) ftsX 727827..728741 (+) 915 WP_255756438.1 permease-like cell division protein FtsX -
  HPQ68_RS03265 (HPQ68_03260) rpoH 729085..729984 (+) 900 WP_050409332.1 RNA polymerase sigma factor RpoH -
  HPQ68_RS03270 (HPQ68_03265) - 730128..730571 (+) 444 WP_255756439.1 hypothetical protein -
  HPQ68_RS03275 (HPQ68_03270) - 730723..731070 (-) 348 WP_255756440.1 antibiotic biosynthesis monooxygenase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37267.04 Da        Isoelectric Point: 7.4675

>NTDB_id=446877 HPQ68_RS03250 WP_255756436.1 726100..727164(+) (pilA) [Massilia sp. erpn]
MFSFFKKKTATAEAPSAAPETRPAAPAAAPAAAAPATAADSALSVADFETAAKPESKQSWMSRLKAGLSKTSANLSLLFV
GARIGDELYEELEAALLMADAGIDATQYLLDALKRKVKEDKLTEAAAVKTALKELMIDLLKPLEKPFELGRHQPTVMMIS
GVNGAGKTTTIGKLAKHMQAHGQSVLLAAGDTFRAAAREQLMVWGQRNNVTVISQASGDPAAVSFDAVQSGKARGSNVVM
VDTAGRLPTQLHLMEELKKIQRVIGKGMEGAPHETLLVIDGNTGQNALAQVKAFDDALQLSGLIITKLDGTAKGGVIAAI
ARVRPVPVYFIGIGEKIEDLQPFNAADFVEALLA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=446877 HPQ68_RS03250 WP_255756436.1 726100..727164(+) (pilA) [Massilia sp. erpn]
ATGTTCAGTTTTTTCAAGAAGAAAACCGCCACCGCCGAAGCGCCATCGGCCGCGCCTGAGACGCGCCCCGCCGCGCCAGC
CGCCGCTCCCGCTGCCGCCGCCCCTGCCACCGCTGCCGATAGCGCGCTGTCGGTCGCCGATTTCGAAACCGCCGCCAAGC
CCGAATCGAAGCAATCGTGGATGAGCCGCCTGAAGGCCGGCCTGTCCAAGACTTCGGCCAATCTGTCCCTGCTCTTCGTC
GGCGCGCGCATCGGCGATGAACTGTATGAAGAGCTGGAAGCGGCCCTGCTGATGGCCGACGCCGGCATCGACGCCACCCA
GTATCTGCTCGATGCGCTCAAGCGCAAGGTCAAGGAAGACAAGCTGACCGAGGCCGCCGCCGTGAAAACGGCGCTCAAGG
AGCTGATGATCGACCTGCTCAAGCCGCTGGAAAAGCCGTTCGAGCTGGGCCGCCACCAGCCTACCGTGATGATGATCTCC
GGCGTCAACGGCGCCGGCAAGACCACCACCATCGGCAAGCTGGCCAAGCATATGCAGGCGCACGGCCAGTCCGTGCTGCT
GGCCGCCGGCGACACCTTCCGCGCCGCGGCGCGCGAGCAGCTGATGGTCTGGGGCCAGCGCAATAATGTGACGGTGATCT
CGCAAGCCTCGGGCGATCCGGCCGCCGTCTCCTTCGACGCGGTCCAGTCGGGCAAGGCGCGCGGCAGCAATGTGGTGATG
GTCGATACCGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAACTGAAAAAGATCCAGCGCGTGATCGGCAAGGG
CATGGAAGGTGCGCCGCACGAAACCCTGCTGGTCATCGACGGCAATACCGGCCAGAACGCGCTGGCCCAGGTCAAGGCTT
TCGACGATGCGCTGCAATTGTCCGGCCTGATCATCACCAAGCTCGATGGCACGGCCAAGGGCGGCGTGATCGCCGCCATC
GCCCGCGTGCGCCCGGTGCCGGTGTACTTCATCGGCATCGGCGAGAAGATCGAAGACCTGCAACCTTTCAATGCGGCCGA
CTTTGTTGAAGCCCTGCTTGCCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(154-353)

SRP54-type protein, helical bundle domain (SRP54_N)

(82-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.41

99.153

0.559