Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FX982_RS11455 Genome accession   NZ_CP053746
Coordinates   2533995..2535365 (+) Length   456 a.a.
NCBI ID   WP_172610713.1    Uniprot ID   A0A6M8MHP7
Organism   Pseudomonas graminis strain PgKB30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2528995..2540365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS11425 (FX982_02286) cydB 2529146..2530153 (+) 1008 WP_122536680.1 cytochrome d ubiquinol oxidase subunit II -
  FX982_RS11430 (FX982_02287) - 2530211..2530411 (+) 201 WP_172610709.1 DUF2474 domain-containing protein -
  FX982_RS11435 (FX982_02288) - 2530494..2531618 (-) 1125 WP_172610710.1 class I SAM-dependent methyltransferase -
  FX982_RS11440 (FX982_02289) - 2531765..2532013 (-) 249 WP_254074896.1 helix-turn-helix transcriptional regulator -
  FX982_RS11445 (FX982_02290) - 2532334..2533110 (+) 777 WP_172610711.1 ferredoxin--NADP reductase -
  FX982_RS11450 (FX982_02291) mscL 2533346..2533795 (-) 450 WP_172610712.1 large-conductance mechanosensitive channel protein MscL -
  FX982_RS11455 (FX982_02292) radA 2533995..2535365 (+) 1371 WP_172610713.1 DNA repair protein RadA Machinery gene
  FX982_RS11460 (FX982_02293) - 2535574..2536182 (+) 609 WP_172610714.1 hypothetical protein -
  FX982_RS11465 (FX982_02294) - 2536199..2536780 (+) 582 WP_172610715.1 hypothetical protein -
  FX982_RS11470 (FX982_02295) - 2536821..2537189 (-) 369 WP_172610716.1 PilZ domain-containing protein -
  FX982_RS11475 (FX982_02296) - 2537342..2539411 (+) 2070 WP_172610717.1 carbon starvation CstA family protein -
  FX982_RS11480 (FX982_02297) - 2539438..2539635 (+) 198 WP_065987541.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48901.23 Da        Isoelectric Point: 6.4003

>NTDB_id=446830 FX982_RS11455 WP_172610713.1 2533995..2535365(+) (radA) [Pseudomonas graminis strain PgKB30]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLVETVIDNSTAAAPSGRSGWTGQQAQIKTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAERMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARIEQPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVAGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRALPGDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLTVIGVTRLDQALDALFEE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=446830 FX982_RS11455 WP_172610713.1 2533995..2535365(+) (radA) [Pseudomonas graminis strain PgKB30]
ATGGCCAAGGCCAAACGCATGTACGGCTGCACCGAGTGCGGTTCGACGTTTCCCAAGTGGGCCGGCCAGTGCAGCGAATG
CGGCGCCTGGAATACCCTCGTTGAAACCGTGATCGACAACAGCACGGCGGCGGCGCCCAGCGGTCGTTCCGGCTGGACCG
GCCAACAGGCACAGATCAAAACCCTGGCCGAAGTCAGTGTCGAAGAAATCCCGCGCTTTTCCACCAACTCCACTGAGCTG
GACCGGGTTCTCGGCGGCGGCCTGGTGGATGGTTCGGTGGTGTTGATCGGCGGCGACCCCGGCATCGGCAAATCGACCAT
TCTGTTGCAGACCCTCTGCGCCATCGCCGAGCGCATGCCGGCGCTGTACGTTACCGGCGAAGAATCGCAGCAGCAGGTCG
CGATGCGTGCCCGTCGCCTCGGCTTGCCCCAGGACAAACTGCGGGTCATGACCGAGACCTGCATCGAAACCATTATTGCC
ACGGCGCGCATCGAGCAGCCGAAGGTCATGGTGATCGACTCGATTCAGACCATCTTCACCGAGCAGCTGCAGTCAGCGCC
CGGCGGTGTATCCCAGGTTCGCGAGAGCGCAGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGGACCGCGATCTTTCTCG
TCGGCCACGTCACCAAAGAAGGCGCGCTGGCCGGGCCTCGGGTGCTGGAGCACATGGTCGACACCGTGTTGTATTTCGAA
GGCGAATCCGATGGCCGCCTGCGTTTGCTGCGTGCGGTCAAAAACCGTTTTGGTGCCGTCAACGAACTGGGCGTCTTCGG
CATGACCGACAGAGGGCTGAAGGAAGTCTCGAACCCTTCGGCGATCTTTCTCACACGCGCGCAGGAAGAAGTCGCGGGCA
GTGTGGTCATGGCCACATGGGAGGGCACCCGGCCGATGCTGGTGGAGGTGCAAGCGCTGGTCGATGACAGCCACCTTTCC
AATCCGCGACGCGTGACGTTAGGTCTGGATCAAAACCGGCTCGCCATGTTGCTCGCAGTACTGCACCGCCACGGCGGTAT
CCCTACCCATGACCAGGATGTGTTTCTCAACGTCGTGGGCGGGGTGAAAGTGCTGGAAACCGCGTCCGACCTGGCCTTGA
TGGCCGCGGTCATGTCCAGCCTGCGTAACCGCGCGCTGCCGGGCGACTTGCTGGTGTTCGGCGAAGTGGGCTTGTCCGGC
GAGGTGCGCCCCGTCCCCAGCGGTCAGGAGCGACTCAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCCCCGAAAGAGTCCCCGCCGGGCCTGACAGTGATTGGCGTGACTCGCCTGGATCAAGCTCTGGACGCGTTAT
TCGAGGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8MHP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.493
  radA Streptococcus mitis SK321

46.813

99.781

0.467
  radA Streptococcus mitis NCTC 12261

46.593

99.781

0.465
  radA Streptococcus pneumoniae Rx1

46.593

99.781

0.465
  radA Streptococcus pneumoniae D39

46.593

99.781

0.465
  radA Streptococcus pneumoniae R6

46.593

99.781

0.465
  radA Streptococcus pneumoniae TIGR4

46.593

99.781

0.465