Detailed information NTG0446795

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY04_RS11385
• Genome accession: NZ_CP053744
• Coordinates: 2540817..2541824 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain SA3G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2535817..2546824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY04_RS11375 (HPY04_11385)	cysM	2536966..2537853 (+)	888	WP_001279365.1	cysteine synthase CysM	-
HPY04_RS11380 (HPY04_11390)	mutS	2538135..2540723 (+)	2589	WP_175249123.1	DNA mismatch repair protein MutS	-
HPY04_RS11385 (HPY04_11395)	rpoS	2540817..2541824 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
HPY04_RS11390 (HPY04_11400)	nlpD	2541898..2542833 (-)	936	WP_114710273.1	murein hydrolase activator NlpD	-
HPY04_RS11395 (HPY04_11405)	-	2542833..2543459 (-)	627	WP_057550676.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY04_RS11400 (HPY04_11410)	surE	2543452..2544204 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HPY04_RS11405 (HPY04_11415)	truD	2544206..2545291 (-)	1086	WP_000129757.1	tRNA pseudouridine(13) synthase TruD	-
HPY04_RS11410 (HPY04_11420)	ispF	2545321..2545797 (-)	477	WP_000619210.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY04_RS11415 (HPY04_11425)	ispD	2545794..2546492 (-)	699	WP_002051127.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY04_RS11420 (HPY04_11430)	ftsB	2546489..2546773 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=446795 HPY04_RS11385 WP_000116735.1 2540817..2541824(-) (rpoS) [Vibrio cholerae strain SA3G]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=446795 HPY04_RS11385 WP_000116735.1 2540817..2541824(-) (rpoS) [Vibrio cholerae strain SA3G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTTCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTATGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997