Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY04_RS11245 Genome accession   NZ_CP053744
Coordinates   2514316..2514834 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA3G     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509316..2519834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS11220 (HPY04_11230) rimM 2509425..2509979 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  HPY04_RS11225 (HPY04_11235) rpsP 2510007..2510255 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY04_RS11230 (HPY04_11240) ffh 2510491..2511876 (-) 1386 WP_000462715.1 signal recognition particle protein -
  HPY04_RS11235 (HPY04_11245) - 2512089..2512883 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY04_RS11240 (HPY04_11250) - 2512966..2514246 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY04_RS11245 (HPY04_11255) luxS 2514316..2514834 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  HPY04_RS11250 (HPY04_11260) gshA 2514883..2516457 (-) 1575 WP_142737801.1 glutamate--cysteine ligase -
  HPY04_RS11255 (HPY04_11265) - 2516569..2519424 (-) 2856 WP_175249118.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=446792 HPY04_RS11245 WP_001130227.1 2514316..2514834(-) (luxS) [Vibrio cholerae strain SA3G]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=446792 HPY04_RS11245 WP_001130227.1 2514316..2514834(-) (luxS) [Vibrio cholerae strain SA3G]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTATTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCTCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1