Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HPY04_RS08480 Genome accession   NZ_CP053744
Coordinates   1891163..1891750 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain SA3G     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1886163..1896750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS08460 (HPY04_08460) - 1886391..1887656 (-) 1266 WP_001961413.1 YdgA family protein -
  HPY04_RS08465 (HPY04_08465) - 1887879..1889834 (+) 1956 WP_001082992.1 ATP-binding protein -
  HPY04_RS08470 (HPY04_08470) - 1889831..1890328 (+) 498 WP_001031962.1 response regulator -
  HPY04_RS08475 (HPY04_08475) - 1890519..1891067 (+) 549 WP_001232641.1 hypothetical protein -
  HPY04_RS08480 (HPY04_08480) tfoX 1891163..1891750 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  HPY04_RS08485 (HPY04_08485) - 1892128..1893048 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  HPY04_RS08490 (HPY04_08490) - 1893069..1893974 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  HPY04_RS08495 (HPY04_08495) - 1894164..1894673 (+) 510 WP_175248987.1 hypothetical protein -
  HPY04_RS08500 (HPY04_08500) panP 1894783..1896429 (+) 1647 WP_000253198.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=446786 HPY04_RS08480 WP_001005366.1 1891163..1891750(-) (tfoX) [Vibrio cholerae strain SA3G]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=446786 HPY04_RS08480 WP_001005366.1 1891163..1891750(-) (tfoX) [Vibrio cholerae strain SA3G]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCGGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGCATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAACAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCATTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.