Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY04_RS08100 Genome accession   NZ_CP053744
Coordinates   1807781..1809205 (+) Length   474 a.a.
NCBI ID   WP_175248963.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA3G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802781..1814205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS08080 (HPY04_08080) - 1803051..1803836 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY04_RS08085 (HPY04_08085) cobT 1803836..1804861 (-) 1026 WP_175248962.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY04_RS08090 (HPY04_08090) msrB 1805472..1805918 (-) 447 WP_000935885.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY04_RS08095 (HPY04_08095) - 1806264..1807637 (+) 1374 WP_000117953.1 L-cystine transporter -
  HPY04_RS08100 (HPY04_08100) sbcB 1807781..1809205 (+) 1425 WP_175248963.1 exodeoxyribonuclease I Machinery gene
  HPY04_RS08105 (HPY04_08105) - 1809237..1809611 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY04_RS08110 (HPY04_08110) - 1809602..1810276 (+) 675 WP_000266239.1 LrgB family protein -
  HPY04_RS08115 (HPY04_08115) cdd 1810446..1811333 (+) 888 WP_001245905.1 cytidine deaminase -
  HPY04_RS08120 (HPY04_08120) - 1811492..1812367 (+) 876 WP_000462870.1 AEC family transporter -
  HPY04_RS08125 (HPY04_08125) purT 1812521..1813696 (+) 1176 WP_175248964.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54498.90 Da        Isoelectric Point: 5.9820

>NTDB_id=446784 HPY04_RS08100 WP_175248963.1 1807781..1809205(+) (sbcB) [Vibrio cholerae strain SA3G]
MQQEHQPTLFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQMADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=446784 HPY04_RS08100 WP_175248963.1 1807781..1809205(+) (sbcB) [Vibrio cholerae strain SA3G]
ATGCAGCAAGAACACCAGCCCACATTATTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTGGCAGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCTGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACTAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCACCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGCCAACACCCAGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAAAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGATGGCAGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987