Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HP430_RS06575 Genome accession   NZ_CP053736
Coordinates   1380964..1381593 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CP8-3_Sichuan     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375964..1386593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP430_RS06555 (HP430_06555) ycbZ 1376354..1378114 (-) 1761 WP_000156526.1 Lon protease family protein -
  HP430_RS06560 (HP430_06560) matP 1378300..1378752 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HP430_RS06565 (HP430_06565) ompA 1378827..1379879 (-) 1053 WP_000750419.1 porin OmpA -
  HP430_RS06570 (HP430_06570) sulA 1380236..1380745 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HP430_RS06575 (HP430_06575) sxy/tfoX 1380964..1381593 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HP430_RS06580 (HP430_06580) yccS 1381556..1383718 (-) 2163 WP_000875044.1 YccS family putative transporter -
  HP430_RS06585 (HP430_06585) yccF 1383728..1384174 (-) 447 WP_001261231.1 YccF domain-containing protein -
  HP430_RS06590 (HP430_06590) helD 1384297..1386351 (+) 2055 WP_112877380.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=446744 HP430_RS06575 WP_000839153.1 1380964..1381593(+) (sxy/tfoX) [Escherichia coli strain CP8-3_Sichuan]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=446744 HP430_RS06575 WP_000839153.1 1380964..1381593(+) (sxy/tfoX) [Escherichia coli strain CP8-3_Sichuan]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1