Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HP431_RS04645 Genome accession   NZ_CP053731
Coordinates   941955..942584 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CP55_Sichuan     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 936955..947584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP431_RS04630 (HP431_04630) helD 937197..939251 (-) 2055 WP_001315388.1 DNA helicase IV -
  HP431_RS04635 (HP431_04635) yccF 939374..939820 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HP431_RS04640 (HP431_04640) yccS 939830..941992 (+) 2163 WP_000875044.1 YccS family putative transporter -
  HP431_RS04645 (HP431_04645) sxy/tfoX 941955..942584 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HP431_RS04650 (HP431_04650) sulA 942803..943312 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HP431_RS04655 (HP431_04655) ompA 943669..944721 (+) 1053 WP_000750419.1 porin OmpA -
  HP431_RS04660 (HP431_04660) matP 944796..945248 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HP431_RS04665 (HP431_04665) ycbZ 945434..947194 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=446720 HP431_RS04645 WP_000839153.1 941955..942584(-) (sxy/tfoX) [Escherichia coli strain CP55_Sichuan]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=446720 HP431_RS04645 WP_000839153.1 941955..942584(-) (sxy/tfoX) [Escherichia coli strain CP55_Sichuan]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1