Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I5Z97_RS03520 Genome accession   NZ_CP065386
Coordinates   690248..691798 (+) Length   516 a.a.
NCBI ID   WP_196980311.1    Uniprot ID   -
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 685248..696798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS03495 (I5Z97_03490) dnaX 685437..687455 (+) 2019 WP_160433550.1 DNA polymerase III subunit gamma/tau -
  I5Z97_RS03500 (I5Z97_03495) - 687461..688357 (+) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  I5Z97_RS03505 (I5Z97_03500) - 688379..689134 (+) 756 WP_196980310.1 ABC transporter permease -
  I5Z97_RS03510 (I5Z97_03505) - 689227..689664 (-) 438 WP_005712689.1 type II toxin-antitoxin system HicB family antitoxin -
  I5Z97_RS03515 (I5Z97_03510) - 689694..689879 (-) 186 WP_021112099.1 type II toxin-antitoxin system HicA family toxin -
  I5Z97_RS03520 (I5Z97_03515) sbcB 690248..691798 (+) 1551 WP_196980311.1 exodeoxyribonuclease I Machinery gene
  I5Z97_RS03525 (I5Z97_03520) - 691881..692840 (+) 960 WP_035496168.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  I5Z97_RS03530 (I5Z97_03525) - 692875..693471 (+) 597 WP_020996918.1 uracil DNA glycosylase superfamily protein -
  I5Z97_RS03535 (I5Z97_03530) - 693472..694293 (+) 822 WP_196980312.1 PHP domain-containing protein -
  I5Z97_RS03540 (I5Z97_03535) ilvN 694400..694891 (-) 492 WP_005712683.1 acetolactate synthase small subunit -
  I5Z97_RS03545 (I5Z97_03540) - 694884..696605 (-) 1722 WP_005712682.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58815.94 Da        Isoelectric Point: 5.6781

>NTDB_id=446715 I5Z97_RS03520 WP_196980311.1 690248..691798(+) (sbcB) [Glaesserella parasuis strain LHDR_HPS_1_2]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGKPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPILAPAKTLLSENATRL
GIDRQSCLENFKLLKSQKSLVREKVIDIFSEERNYPASNNIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPR
IEPLLFHYRARHYSETLTRAEQVRWQKYCYQQLEAKAEAFDQAVDLLSAQYHDNSEKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=446715 I5Z97_RS03520 WP_196980311.1 690248..691798(+) (sbcB) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTAAACCCGTAATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCTCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTACCATTGGCTTGGCATCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGTCTTTATACCAAAAAAGTAGAATTAGAAGCTCAAGGGCTTTATGCTGTTC
CACTAAAACTCGTGCATATTAATAAATGCCCAATTTTAGCTCCAGCCAAAACGTTACTGTCTGAAAATGCAACACGTTTA
GGCATCGATCGTCAATCCTGTTTAGAAAATTTTAAACTGCTAAAATCCCAAAAAAGCCTTGTGCGAGAAAAGGTTATTGA
TATTTTTTCTGAGGAAAGGAATTATCCAGCGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCGATTTTGCGAAATCTAAAACCTGAAGAGCTTGCACATCACGGCTTGAAATTTAGCGATCCAAGA
ATTGAACCTCTACTTTTCCATTATCGAGCAAGACATTACTCAGAAACCTTAACACGCGCAGAACAAGTACGCTGGCAAAA
GTATTGCTATCAACAACTTGAAGCAAAAGCAGAGGCCTTTGATCAAGCGGTTGATCTGTTATCGGCTCAATATCACGATA
ATTCTGAAAAGATAAAATTACTGACAGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAGTCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-469)

Exonuclease (RNase_T)

(8-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.65

90.891

0.506