Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | HP432_RS12545 | Genome accession | NZ_CP053730 |
| Coordinates | 2446243..2446872 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain CP61_Sichuan | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2418407..2456042 | 2446243..2446872 | within | 0 |
Gene organization within MGE regions
Location: 2418407..2456042
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP432_RS12415 (HP432_12415) | ssuD | 2418612..2419757 (-) | 1146 | WP_000056006.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| HP432_RS12420 (HP432_12420) | ssuA | 2419754..2420713 (-) | 960 | WP_001244308.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| HP432_RS12425 (HP432_12425) | ssuE | 2420706..2421281 (-) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| HP432_RS12430 (HP432_12430) | - | 2421637..2422173 (+) | 537 | WP_250187914.1 | fimbrial protein | - |
| HP432_RS12440 (HP432_12440) | - | 2423417..2423512 (+) | 96 | Protein_2263 | fimbrial protein | - |
| HP432_RS12445 (HP432_12445) | elfD | 2423595..2424296 (+) | 702 | WP_001295349.1 | molecular chaperone | - |
| HP432_RS12450 (HP432_12450) | elfC | 2424321..2426921 (+) | 2601 | WP_000286319.1 | fimbrial biogenesis usher protein | - |
| HP432_RS12455 (HP432_12455) | elfG | 2426912..2427982 (+) | 1071 | WP_001165668.1 | fimbrial protein | - |
| HP432_RS12460 (HP432_12460) | ycbU | 2427994..2428536 (+) | 543 | WP_000730614.1 | fimbrial protein | - |
| HP432_RS12465 (HP432_12465) | ycbV | 2428544..2429059 (+) | 516 | WP_000919497.1 | fimbrial protein | - |
| HP432_RS12470 (HP432_12470) | ycbF | 2429025..2429762 (+) | 738 | WP_162702279.1 | fimbrial chaperone | - |
| HP432_RS12475 (HP432_12475) | pyrD | 2429873..2430883 (+) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| HP432_RS12480 (HP432_12480) | zapC | 2431057..2431599 (+) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| HP432_RS12485 (HP432_12485) | ycbX | 2431596..2432705 (-) | 1110 | WP_094322461.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| HP432_RS12490 (HP432_12490) | rlmKL | 2432949..2435057 (+) | 2109 | WP_001086539.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| HP432_RS12495 (HP432_12495) | uup | 2435069..2436976 (+) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| HP432_RS12500 (HP432_12500) | pqiA | 2437106..2438359 (+) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| HP432_RS12505 (HP432_12505) | pqiB | 2438364..2440004 (+) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| HP432_RS12510 (HP432_12510) | pqiC | 2440001..2440564 (+) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| HP432_RS12515 (HP432_12515) | rmf | 2440820..2440987 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| HP432_RS12520 (HP432_12520) | fabA | 2441057..2441575 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| HP432_RS12525 (HP432_12525) | ycbZ | 2441644..2443404 (-) | 1761 | WP_001489425.1 | Lon protease family protein | - |
| HP432_RS12530 (HP432_12530) | matP | 2443590..2444042 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| HP432_RS12535 (HP432_12535) | ompA | 2444118..2445158 (-) | 1041 | WP_172615727.1 | porin OmpA | - |
| HP432_RS12540 (HP432_12540) | sulA | 2445515..2446024 (-) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| HP432_RS12545 (HP432_12545) | sxy/tfoX | 2446243..2446872 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| HP432_RS12550 (HP432_12550) | yccS | 2446835..2448997 (-) | 2163 | WP_000875061.1 | YccS family putative transporter | - |
| HP432_RS12555 (HP432_12555) | yccF | 2449007..2449453 (-) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| HP432_RS12560 (HP432_12560) | helD | 2449576..2451630 (+) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| HP432_RS12565 (HP432_12565) | mgsA | 2451662..2452120 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| HP432_RS12570 (HP432_12570) | yccT | 2452215..2452877 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| HP432_RS12575 (HP432_12575) | yccU | 2453050..2453463 (+) | 414 | WP_001301418.1 | CoA-binding protein | - |
| HP432_RS12580 (HP432_12580) | hspQ | 2453507..2453824 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| HP432_RS12585 (HP432_12585) | rlmI | 2453882..2455072 (-) | 1191 | WP_172615728.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| HP432_RS12590 (HP432_12590) | yccX | 2455167..2455445 (+) | 279 | WP_000048252.1 | acylphosphatase | - |
| HP432_RS12595 (HP432_12595) | tusE | 2455442..2455771 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=446707 HP432_RS12545 WP_000839153.1 2446243..2446872(+) (sxy/tfoX) [Escherichia coli strain CP61_Sichuan]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=446707 HP432_RS12545 WP_000839153.1 2446243..2446872(+) (sxy/tfoX) [Escherichia coli strain CP61_Sichuan]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |