Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HP434_RS13475 Genome accession   NZ_CP053720
Coordinates   2791754..2792383 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CP131_Sichuan     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786754..2797383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP434_RS13460 (HP434_13465) helD 2786996..2789050 (-) 2055 WP_001400180.1 DNA helicase IV -
  HP434_RS13465 (HP434_13470) yccF 2789173..2789619 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HP434_RS13470 (HP434_13475) yccS 2789629..2791791 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HP434_RS13475 (HP434_13480) sxy/tfoX 2791754..2792383 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HP434_RS13480 (HP434_13485) sulA 2792602..2793111 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HP434_RS13485 (HP434_13490) ompA 2793468..2794508 (+) 1041 WP_000750416.1 porin OmpA -
  HP434_RS13490 (HP434_13495) matP 2794584..2795036 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HP434_RS13495 (HP434_13500) ycbZ 2795222..2796982 (+) 1761 WP_166498786.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=446666 HP434_RS13475 WP_000839153.1 2791754..2792383(-) (sxy/tfoX) [Escherichia coli strain CP131_Sichuan]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=446666 HP434_RS13475 WP_000839153.1 2791754..2792383(-) (sxy/tfoX) [Escherichia coli strain CP131_Sichuan]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1