Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPELS_RS00095 Genome accession   NC_017063
Coordinates   13803..14084 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8803..19084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS00070 (HPELS_00050) groES 9368..9724 (-) 357 WP_000671934.1 co-chaperone GroES -
  HPELS_RS00080 (HPELS_00055) dnaG 10011..11690 (+) 1680 WP_000601584.1 DNA primase -
  HPELS_RS00085 (HPELS_00060) - 11687..12739 (+) 1053 WP_000809433.1 MnmA/TRMU family protein -
  HPELS_RS00090 (HPELS_00065) - 12829..13656 (+) 828 WP_001154957.1 DUF5718 family protein -
  HPELS_RS00095 (HPELS_00070) comB2 13803..14084 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPELS_RS00100 (HPELS_00075) comB3 14084..14347 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPELS_RS00105 (HPELS_00080) comB4 14349..16712 (+) 2364 WP_000890273.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPELS_RS00110 (HPELS_00085) - 16924..18354 (+) 1431 WP_195182302.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=44659 HPELS_RS00095 WP_001272690.1 13803..14084(+) (comB2) [Helicobacter pylori ELS37]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=44659 HPELS_RS00095 WP_001272690.1 13803..14084(+) (comB2) [Helicobacter pylori ELS37]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment