Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   I3251_RS26215 Genome accession   NZ_CP065374
Coordinates   5577001..5577330 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAG7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5572001..5582330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3251_RS26200 (I3251_26200) - 5572616..5573578 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  I3251_RS26205 (I3251_26205) - 5573578..5574615 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  I3251_RS26210 (I3251_26210) - 5574813..5576810 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  I3251_RS26215 (I3251_26215) comEA/comE1 5577001..5577330 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  I3251_RS26225 (I3251_26225) - 5577548..5578744 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  I3251_RS26230 (I3251_26230) uvrB 5578932..5580944 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=446575 I3251_RS26215 WP_023109812.1 5577001..5577330(+) (comEA/comE1) [Pseudomonas aeruginosa strain PAG7]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=446575 I3251_RS26215 WP_023109812.1 5577001..5577330(+) (comEA/comE1) [Pseudomonas aeruginosa strain PAG7]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385