Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I3251_RS19345 Genome accession   NZ_CP065374
Coordinates   4125584..4126309 (-) Length   241 a.a.
NCBI ID   WP_105248472.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAG7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4120584..4131309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3251_RS19320 (I3251_19320) - 4121057..4121572 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  I3251_RS19325 (I3251_19325) rarD 4122261..4123157 (-) 897 WP_003103301.1 EamA family transporter RarD -
  I3251_RS19330 (I3251_19330) - 4123360..4124334 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  I3251_RS19335 (I3251_19335) - 4124396..4125154 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  I3251_RS19340 (I3251_19340) - 4125222..4125542 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  I3251_RS19345 (I3251_19345) comF 4125584..4126309 (-) 726 WP_105248472.1 ComF family protein Machinery gene
  I3251_RS19350 (I3251_19350) - 4126448..4126741 (-) 294 WP_003084806.1 hypothetical protein -
  I3251_RS19355 (I3251_19355) - 4126795..4127721 (-) 927 WP_003121790.1 LysR family transcriptional regulator -
  I3251_RS19360 (I3251_19360) - 4127839..4128597 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  I3251_RS19365 (I3251_19365) - 4128674..4128922 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  I3251_RS19370 (I3251_19370) - 4128933..4130309 (+) 1377 WP_003121791.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  I3251_RS19375 (I3251_19375) - 4130311..4131189 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27077.57 Da        Isoelectric Point: 11.3830

>NTDB_id=446561 I3251_RS19345 WP_105248472.1 4125584..4126309(-) (comF) [Pseudomonas aeruginosa strain PAG7]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPSYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASNVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=446561 I3251_RS19345 WP_105248472.1 4125584..4126309(-) (comF) [Pseudomonas aeruginosa strain PAG7]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGTCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCAATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.43

100

0.386
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361