Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I3251_RS18760 Genome accession   NZ_CP065374
Coordinates   3993770..3995137 (+) Length   455 a.a.
NCBI ID   WP_096248883.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAG7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3988770..4000137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3251_RS18740 (I3251_18740) - 3989607..3990173 (-) 567 WP_003084491.1 hypothetical protein -
  I3251_RS18745 (I3251_18745) rsmD 3990176..3990772 (-) 597 WP_009875718.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I3251_RS18750 (I3251_18750) - 3990772..3992259 (-) 1488 WP_003142627.1 pitrilysin family protein -
  I3251_RS18755 (I3251_18755) - 3992252..3993649 (-) 1398 WP_003084498.1 pitrilysin family protein -
  I3251_RS18760 (I3251_18760) pilA 3993770..3995137 (+) 1368 WP_096248883.1 signal recognition particle-docking protein FtsY Machinery gene
  I3251_RS18765 (I3251_18765) ftsE 3995134..3995805 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  I3251_RS18770 (I3251_18770) ftsX 3995805..3996812 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  I3251_RS18775 (I3251_18775) rpoH 3996926..3997780 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  I3251_RS18780 (I3251_18780) - 3997845..3998450 (+) 606 WP_003084511.1 hypothetical protein -
  I3251_RS18785 (I3251_18785) mtgA 3998455..3999186 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  I3251_RS18790 (I3251_18790) - 3999223..3999600 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  I3251_RS18795 (I3251_18795) thiS 3999703..3999903 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48381.78 Da        Isoelectric Point: 4.5272

>NTDB_id=446554 I3251_RS18760 WP_096248883.1 3993770..3995137(+) (pilA) [Pseudomonas aeruginosa strain PAG7]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRSEAPVAQPEPILAAEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKT
SASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQP
LQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVI
FDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLA
LTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=446554 I3251_RS18760 WP_096248883.1 3993770..3995137(+) (pilA) [Pseudomonas aeruginosa strain PAG7]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTAGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGTCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGC
TGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACC
AGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGA
GACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCA
AGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCG
TTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGG
CAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGG
AGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATC
TTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACTGCCGGACGCCTGCATACCAAGGA
CAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGG
TGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCC
CTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATAT
CGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGA
ACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(250-449)

SRP54-type protein, helical bundle domain (SRP54_N)

(165-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.911

96.044

0.451