Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HNV93_RS00130 Genome accession   NZ_CP053717
Coordinates   16065..16679 (+) Length   204 a.a.
NCBI ID   WP_032873955.1    Uniprot ID   -
Organism   Bacillus velezensis strain A2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11065..21679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNV93_RS00095 aroE 11751..12593 (+) 843 WP_032873946.1 shikimate dehydrogenase -
  HNV93_RS00100 yhbY 12587..12877 (+) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  HNV93_RS00105 - 12888..13457 (+) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  HNV93_RS00110 yqeK 13447..14022 (+) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  HNV93_RS00115 rsfS 14026..14382 (+) 357 WP_007408260.1 ribosome silencing factor -
  HNV93_RS00120 - 14379..15116 (+) 738 WP_032873951.1 class I SAM-dependent methyltransferase -
  HNV93_RS00125 comER 15185..16006 (-) 822 WP_012118027.1 late competence protein ComER -
  HNV93_RS00130 comEA 16065..16679 (+) 615 WP_032873955.1 helix-hairpin-helix domain-containing protein Machinery gene
  HNV93_RS00135 - 16746..17315 (+) 570 WP_003152868.1 ComE operon protein 2 -
  HNV93_RS00140 comEC 17316..19667 (+) 2352 WP_032873958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HNV93_RS00145 - 19686..19820 (-) 135 WP_003152870.1 YqzM family protein -
  HNV93_RS00150 - 19861..20012 (+) 152 Protein_30 hypothetical protein -
  HNV93_RS00155 holA 20052..21093 (+) 1042 Protein_31 DNA polymerase III subunit delta -
  HNV93_RS00160 rpsT 21110..21376 (-) 267 WP_003152876.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22265.47 Da        Isoelectric Point: 6.4940

>NTDB_id=446539 HNV93_RS00130 WP_032873955.1 16065..16679(+) (comEA) [Bacillus velezensis strain A2]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDLKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=446539 HNV93_RS00130 WP_032873955.1 16065..16679(+) (comEA) [Bacillus velezensis strain A2]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATTTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAACGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

31.897

100

0.363