Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HPT10_RS10445 Genome accession   NZ_CP053705
Coordinates   2225336..2225971 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PAC6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2220336..2230971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS10430 (HPT10_10430) - 2221054..2222298 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  HPT10_RS10435 (HPT10_10435) - 2222374..2222907 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HPT10_RS10440 (HPT10_10440) comA 2223038..2225263 (+) 2226 WP_171888749.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HPT10_RS10445 (HPT10_10445) exbB 2225336..2225971 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HPT10_RS10450 (HPT10_10450) - 2225968..2226408 (+) 441 WP_023125617.1 biopolymer transporter ExbD -
  HPT10_RS10455 (HPT10_10455) lpxK 2226408..2227406 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  HPT10_RS10460 (HPT10_10460) - 2227444..2227629 (+) 186 WP_003091157.1 Trm112 family protein -
  HPT10_RS10465 (HPT10_10465) kdsB 2227629..2228392 (+) 764 Protein_2069 3-deoxy-manno-octulosonate cytidylyltransferase -
  HPT10_RS10470 (HPT10_10470) - 2228392..2228856 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  HPT10_RS10475 (HPT10_10475) murB 2228853..2229872 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=446469 HPT10_RS10445 WP_003091163.1 2225336..2225971(+) (exbB) [Pseudomonas aeruginosa strain PAC6]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=446469 HPT10_RS10445 WP_003091163.1 2225336..2225971(+) (exbB) [Pseudomonas aeruginosa strain PAC6]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCACCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81