Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   I5M77_RS12430 Genome accession   NZ_CP065369
Coordinates   2607102..2607575 (+) Length   157 a.a.
NCBI ID   WP_025792561.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2602102..2612575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5M77_RS12400 (I5M77_12400) cytR 2602174..2603181 (+) 1008 WP_005481416.1 DNA-binding transcriptional regulator CytR Regulator
  I5M77_RS12405 (I5M77_12405) ftsN 2603358..2603903 (+) 546 WP_005481405.1 cell division protein FtsN -
  I5M77_RS12410 (I5M77_12410) hslV 2604068..2604619 (+) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  I5M77_RS12415 (I5M77_12415) hslU 2604643..2605974 (+) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  I5M77_RS12420 (I5M77_12420) - 2606398..2606622 (-) 225 WP_005489715.1 hypothetical protein -
  I5M77_RS12425 (I5M77_12425) - 2606782..2606931 (-) 150 WP_005489496.1 AlpA family phage regulatory protein -
  I5M77_RS12430 (I5M77_12430) radC 2607102..2607575 (+) 474 WP_025792561.1 RadC family protein Machinery gene
  I5M77_RS12435 (I5M77_12435) - 2607572..2608003 (+) 432 WP_017633432.1 DUF2787 family protein -
  I5M77_RS12440 (I5M77_12440) - 2608152..2608943 (+) 792 WP_224067051.1 helix-turn-helix transcriptional regulator -
  I5M77_RS12445 (I5M77_12445) - 2608940..2610103 (+) 1164 WP_025792556.1 hypothetical protein -
  I5M77_RS12450 (I5M77_12450) - 2610470..2611126 (-) 657 WP_025792554.1 inovirus Gp2 family protein -
  I5M77_RS12455 (I5M77_12455) - 2611507..2612313 (+) 807 WP_025792553.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17690.11 Da        Isoelectric Point: 6.9794

>NTDB_id=446450 I5M77_RS12430 WP_025792561.1 2607102..2607575(+) (radC) [Vibrio parahaemolyticus strain 20-082A3]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASSEHEVFALLLLDNQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALELVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=446450 I5M77_RS12430 WP_025792561.1 2607102..2607575(+) (radC) [Vibrio parahaemolyticus strain 20-082A3]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTTCGATTCAAACTAGCCAGCT
CGGAGCACGAGGTTTTCGCTCTGCTATTACTTGATAACCAACACCGTGTCATCGAGTTTAAATCACTCTTTAAAGGCACC
ATTGACTCCGCCAGCGTCTATCCGCGCGAGGTCGTCAAAAGCGTTTTGGAAGTAAATGCTGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCTGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTTATCGACGCTTTAGAGTTAG
TTGATGTCAGGGTGCTTGACCATATCGTTGTAGGAGAAAGTAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.905

87.261

0.427