Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   I5M77_RS06205 Genome accession   NZ_CP065369
Coordinates   1206935..1208479 (+) Length   514 a.a.
NCBI ID   WP_025792302.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082A3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201935..1213479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5M77_RS06180 (I5M77_06180) - 1202236..1202556 (+) 321 WP_005454817.1 STAS domain-containing protein -
  I5M77_RS06185 (I5M77_06185) - 1202583..1203485 (+) 903 WP_025792307.1 OmpA family protein -
  I5M77_RS06190 (I5M77_06190) - 1203563..1205584 (+) 2022 Protein_1152 SLBB domain-containing protein -
  I5M77_RS06195 (I5M77_06195) - 1205584..1206270 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  I5M77_RS06200 (I5M77_06200) - 1206283..1206663 (+) 381 WP_025792304.1 Hpt domain-containing protein -
  I5M77_RS06205 (I5M77_06205) luxO 1206935..1208479 (+) 1545 WP_025792302.1 sigma-54-dependent transcriptional regulator Regulator
  I5M77_RS06210 (I5M77_06210) - 1208454..1209524 (+) 1071 WP_025792301.1 glycosyltransferase family 4 protein -
  I5M77_RS06215 (I5M77_06215) - 1209675..1210859 (+) 1185 WP_020840666.1 glycosyltransferase -
  I5M77_RS06220 (I5M77_06220) - 1210870..1212042 (+) 1173 WP_005483470.1 glycosyltransferase family 4 protein -
  I5M77_RS06225 (I5M77_06225) - 1212035..1213465 (+) 1431 WP_025792298.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57460.24 Da        Isoelectric Point: 5.7315

>NTDB_id=446418 I5M77_RS06205 WP_025792302.1 1206935..1208479(+) (luxO) [Vibrio parahaemolyticus strain 20-082A3]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHEIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAIQTQPIEPVQPAQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=446418 I5M77_RS06205 WP_025792302.1 1206935..1208479(+) (luxO) [Vibrio parahaemolyticus strain 20-082A3]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGAAGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATCAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGGGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGAGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAACCTCAACGGACACAATGCTCCAGCGATACAAACACAACCCATTGAACCAGT
GCAACCTGCTCAAGAGGTACCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

48.898

97.082

0.475