Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   I5046_RS09345 Genome accession   NZ_CP065355
Coordinates   1920406..1921119 (+) Length   237 a.a.
NCBI ID   WP_196957487.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JW31330_O1_dhc     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915406..1926119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5046_RS09280 (I5046_09280) ssb 1915888..1916316 (-) 429 WP_045178958.1 single-stranded DNA-binding protein -
  I5046_RS09285 (I5046_09285) - 1916316..1916954 (-) 639 WP_123138802.1 ERF family protein -
  I5046_RS09290 (I5046_09290) - 1916954..1917433 (-) 480 WP_123138803.1 siphovirus Gp157 family protein -
  I5046_RS09295 (I5046_09295) - 1917448..1917708 (-) 261 WP_000291089.1 DUF1108 family protein -
  I5046_RS09300 (I5046_09300) - 1917802..1917963 (-) 162 WP_123138804.1 DUF1270 family protein -
  I5046_RS09305 (I5046_09305) - 1917956..1918177 (-) 222 WP_123138805.1 hypothetical protein -
  I5046_RS09310 (I5046_09310) - 1918248..1918493 (+) 246 WP_000122244.1 hypothetical protein -
  I5046_RS09315 (I5046_09315) - 1918461..1918664 (-) 204 Protein_1805 hypothetical protein -
  I5046_RS09320 (I5046_09320) - 1918680..1919429 (-) 750 WP_115305235.1 phage antirepressor KilAC domain-containing protein -
  I5046_RS09325 (I5046_09325) - 1919490..1919732 (+) 243 WP_000498529.1 hypothetical protein -
  I5046_RS09330 (I5046_09330) - 1919680..1919988 (-) 309 WP_196957486.1 hypothetical protein -
  I5046_RS09335 (I5046_09335) - 1920004..1920273 (-) 270 WP_123138816.1 helix-turn-helix transcriptional regulator -
  I5046_RS09340 (I5046_09340) - 1920270..1920443 (-) 174 Protein_1810 transcriptional regulator -
  I5046_RS09345 (I5046_09345) irvR 1920406..1921119 (+) 714 WP_196957487.1 XRE family transcriptional regulator Regulator
  I5046_RS09350 (I5046_09350) - 1921131..1921277 (+) 147 WP_001049401.1 hypothetical protein -
  I5046_RS09355 (I5046_09355) - 1921274..1921459 (+) 186 WP_000100503.1 hypothetical protein -
  I5046_RS09360 (I5046_09360) - 1921495..1922478 (+) 984 WP_000439125.1 DUF3644 domain-containing protein -
  I5046_RS09365 (I5046_09365) - 1922657..1923703 (+) 1047 WP_001145720.1 tyrosine-type recombinase/integrase -
  I5046_RS09370 (I5046_09370) yfkAB 1923748..1924893 (+) 1146 WP_123138808.1 radical SAM/CxCxxxxC motif protein YfkAB -
  I5046_RS09375 (I5046_09375) - 1925153..1925683 (-) 531 WP_123138809.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27025.70 Da        Isoelectric Point: 6.0425

>NTDB_id=446386 I5046_RS09345 WP_196957487.1 1920406..1921119(+) (irvR) [Staphylococcus aureus strain JW31330_O1_dhc]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLDEQNSKGDNVVDINSYKQDKTPVNVNGCVSAGVGKRLHDETLFTEMVKAPVPPHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=446386 I5046_RS09345 WP_196957487.1 1920406..1921119(+) (irvR) [Staphylococcus aureus strain JW31330_O1_dhc]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTAGATGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAAGATAAAACTCCAGTTAATGTCAATGGATGTGTCTCCGCTGGTGTAG
GAAAACGACTGCACGATGAAACGCTATTCACTGAAATGGTTAAAGCCCCTGTTCCTCCACATGATTTAGCATTAAAAGTT
AATGGCGATTCTATGGAGCCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCATAATATAAAGAATGGACA
AATAGGTATATTCATCATCGAAGAAGAGGCTTATGTTAAGAAAGTCTTCGTTGAGGATGACAGATTGACTTTAGTCTCAT
TGAACAAAGAATACCGCGACCTTCACTTTTATAGAAATGAAAGTGTGAGATTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

32.857

100

0.388