Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HO274_RS07855 Genome accession   NZ_CP053676
Coordinates   1598923..1600338 (-) Length   471 a.a.
NCBI ID   WP_273118475.1    Uniprot ID   -
Organism   MAG: Ferrovum myxofaciens isolate S2.4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593923..1605338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO274_RS07835 (HO274_07805) rapZ 1596239..1597147 (-) 909 WP_051862107.1 RNase adapter RapZ -
  HO274_RS07840 (HO274_07810) hprK 1597137..1598102 (-) 966 WP_273118469.1 HPr(Ser) kinase/phosphatase -
  HO274_RS07845 (HO274_07815) - 1598089..1598562 (-) 474 WP_031596534.1 PTS sugar transporter subunit IIA -
  HO274_RS07850 (HO274_07820) hpf 1598569..1598895 (-) 327 WP_031596536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HO274_RS07855 (HO274_07825) rpoN/rpoN1 1598923..1600338 (-) 1416 WP_273118475.1 RNA polymerase factor sigma-54 Machinery gene
  HO274_RS07860 (HO274_07830) lptB 1600342..1601064 (-) 723 WP_273118477.1 LPS export ABC transporter ATP-binding protein -
  HO274_RS07865 (HO274_07835) lptA 1601061..1601693 (-) 633 WP_273118480.1 lipopolysaccharide transport periplasmic protein LptA -
  HO274_RS07870 (HO274_07840) lptC 1601653..1602240 (-) 588 WP_031596542.1 LPS export ABC transporter periplasmic protein LptC -
  HO274_RS07875 (HO274_07845) - 1602228..1602764 (-) 537 WP_062187308.1 KdsC family phosphatase -
  HO274_RS07880 (HO274_07850) - 1602774..1603775 (-) 1002 WP_031596547.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53202.50 Da        Isoelectric Point: 4.9468

>NTDB_id=446249 HO274_RS07855 WP_273118475.1 1598923..1600338(-) (rpoN/rpoN1) [MAG: Ferrovum myxofaciens isolate S2.4]
MKVQLQLKQTTQLSLTPQLQQSIRLLQLSTQELEQEVEEFLRLNPLLERADGKDGAVDSEPGAFETADSIETAEPSSSAE
IEQESWNFEEGSGIGLGGQGEDEDEGIQDLRVIPLSLRDHLLGQVRLMPLEERDQELVATLIDYLDEDGYLRHSFLDLNS
SVSDALGEVEESEWLVALRILQSLDPAGIGARTLSECLELQLLASHATEEDKRLGKKLLDHLEWLAQREYTRLKRVLGIE
ERKVRELQQMLLHFDPRPGAAFSTAETRYVVPDVIVRRTERGWSVSLNEGVMPRLRVNQVYANILKKGVPGHSMSQQLQE
ARWLIKNIQQRFDTILRVACAVVERQKDFLERGEVGMKPLVLREIAEVLGLHESTISRVTVQKYLLTPRGLFELKYFFSS
HVGTDSGEAASSTAVRALIRQLINQEDIKSPLSDQRIANLLGERGFQVARRTVAKYREAMHLPAASLRKSL

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=446249 HO274_RS07855 WP_273118475.1 1598923..1600338(-) (rpoN/rpoN1) [MAG: Ferrovum myxofaciens isolate S2.4]
ATGAAGGTCCAGCTCCAACTCAAGCAAACGACGCAACTCTCCCTGACGCCGCAGTTGCAGCAATCGATTCGATTGTTGCA
ACTCTCTACCCAGGAGTTGGAACAGGAAGTCGAAGAATTTCTCCGGCTCAATCCTCTGCTGGAACGTGCCGACGGGAAAG
ATGGTGCCGTTGATTCAGAGCCCGGCGCGTTTGAAACTGCCGACTCCATTGAAACAGCAGAACCCTCCTCTTCTGCCGAA
ATCGAGCAGGAATCCTGGAATTTCGAAGAAGGAAGCGGCATCGGATTGGGGGGGCAGGGCGAAGATGAGGATGAGGGGAT
ACAGGATCTGCGCGTAATTCCACTGTCCCTGCGCGATCATCTTCTGGGGCAGGTACGTCTGATGCCCCTCGAGGAACGGG
ATCAGGAACTGGTGGCCACGCTGATCGATTACCTGGATGAAGACGGTTACCTGCGCCATTCCTTCCTTGATCTGAATTCC
AGTGTATCCGATGCGCTCGGAGAGGTAGAAGAGTCAGAGTGGCTGGTGGCCCTGCGCATTCTGCAATCCCTGGATCCCGC
GGGGATTGGGGCGCGTACCTTGAGCGAGTGCCTGGAACTGCAATTGTTGGCCAGCCATGCGACCGAGGAGGATAAACGAC
TGGGCAAAAAATTGCTCGATCACCTTGAATGGCTGGCACAACGGGAATACACTCGTCTGAAGAGAGTTTTGGGCATCGAG
GAACGCAAGGTCAGGGAATTGCAGCAGATGTTGTTGCACTTCGATCCTCGTCCGGGGGCGGCGTTCAGTACAGCCGAAAC
CCGTTATGTCGTGCCCGATGTGATTGTAAGGCGGACGGAGCGGGGTTGGAGTGTATCGCTGAATGAGGGAGTAATGCCAC
GTCTGCGCGTCAATCAGGTCTATGCCAACATTCTCAAGAAAGGGGTTCCGGGTCACTCCATGTCCCAACAACTTCAGGAA
GCACGTTGGTTGATCAAGAATATCCAGCAACGTTTTGACACGATTTTACGGGTGGCCTGTGCTGTAGTCGAGCGACAAAA
AGATTTTCTGGAGCGGGGTGAGGTCGGGATGAAACCTCTGGTTTTGCGCGAAATTGCTGAGGTGTTGGGACTCCATGAAT
CCACTATTTCGCGCGTGACTGTCCAGAAGTATCTGTTGACTCCGCGCGGTTTATTCGAATTAAAATACTTCTTCAGCAGC
CATGTGGGGACGGACAGTGGCGAAGCGGCTTCCTCCACCGCTGTTCGTGCCCTGATCCGTCAATTGATCAATCAGGAAGA
TATTAAAAGTCCTCTGTCCGACCAGCGTATTGCGAATTTGCTGGGCGAGCGGGGGTTCCAGGTGGCAAGGCGGACCGTGG
CCAAGTATCGTGAGGCCATGCATCTTCCTGCCGCCAGTTTGCGCAAGTCGTTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(314-469)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(115-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.479

100

0.554