Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   HPC60_RS11510 Genome accession   NZ_CP053671
Coordinates   2270516..2271454 (-) Length   312 a.a.
NCBI ID   WP_179107735.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2265516..2276454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS11485 (HPC60_06235) frr 2265633..2266190 (-) 558 WP_004254618.1 ribosome recycling factor -
  HPC60_RS11490 (HPC60_06240) pyrH 2266403..2267119 (-) 717 WP_004254608.1 UMP kinase -
  HPC60_RS11495 (HPC60_06245) - 2267204..2267656 (-) 453 WP_023188637.1 hypothetical protein -
  HPC60_RS11500 (HPC60_06250) - 2267790..2268977 (-) 1188 WP_023188636.1 acetate kinase -
  HPC60_RS11505 (HPC60_06255) - 2269134..2270321 (-) 1188 WP_023188635.1 acetate kinase -
  HPC60_RS11510 (HPC60_06260) comYH 2270516..2271454 (-) 939 WP_179107735.1 class I SAM-dependent methyltransferase Machinery gene
  HPC60_RS11515 (HPC60_06265) - 2271542..2271793 (-) 252 WP_004254583.1 DUF3165 family protein -
  HPC60_RS11520 (HPC60_06270) typA 2271894..2273726 (-) 1833 WP_025016832.1 translational GTPase TypA -
  HPC60_RS11525 (HPC60_06275) - 2273914..2274372 (-) 459 WP_023188633.1 hypothetical protein -
  HPC60_RS11530 (HPC60_06280) - 2274529..2275155 (-) 627 WP_023188632.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34784.87 Da        Isoelectric Point: 4.3281

>NTDB_id=446210 HPC60_RS11510 WP_179107735.1 2270516..2271454(-) (comYH) [Lactococcus lactis subsp. lactis strain G121]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNNEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRFMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=446210 HPC60_RS11510 WP_179107735.1 2270516..2271454(-) (comYH) [Lactococcus lactis subsp. lactis strain G121]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAATGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTTATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487