Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   HPK20_RS17100 Genome accession   NZ_CP053665
Coordinates   494120..496168 (-) Length   682 a.a.
NCBI ID   WP_020432686.1    Uniprot ID   A0AAX2LY86
Organism   Vibrio fluvialis strain A8     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 489120..501168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS17085 (HPK20_17110) clcA 490166..491563 (+) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  HPK20_RS17090 (HPK20_17115) - 491728..492684 (+) 957 WP_038157684.1 TDT family transporter -
  HPK20_RS17095 (HPK20_17120) cqsA 492903..494084 (+) 1182 WP_020432684.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HPK20_RS17100 (HPK20_17125) cqsS 494120..496168 (-) 2049 WP_020432686.1 hybrid sensor histidine kinase/response regulator Regulator
  HPK20_RS17105 (HPK20_17130) - 496307..499348 (-) 3042 WP_020432687.1 AAA family ATPase -
  HPK20_RS17110 (HPK20_17135) - 499352..500494 (-) 1143 WP_020432688.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79191.80 Da        Isoelectric Point: 5.3014

>NTDB_id=446152 HPK20_RS17100 WP_020432686.1 494120..496168(-) (cqsS) [Vibrio fluvialis strain A8]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVEDDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKTQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLSETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVTPLDIRQMLRDTDKELDKLFFDVAELVQDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRDSDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=446152 HPK20_RS17100 WP_020432686.1 494120..496168(-) (cqsS) [Vibrio fluvialis strain A8]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTCGTGGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGCAGCTTTTGTTCGTGTTTGT
TCGGTGGCATCGCGTTTCGTAATTCCGTGCCCAAATTGTGGCAGCGGTATCTGCCGTATTATTACCTGTTTATGATAGGT
TTCTGCCTGCCATTCTTTTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCCTTTATGGCATC
AATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTCCAGGCCGCGATATCCATATTGGCAGCCTACG
GTGCGGTGTATTGGATTCAGCACTATGAGCCGCAACAGTATATTTTGTGGCCGTACGTACCGATTTTCCTATTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGAAACCAGAGCTCTCACGAATCAAAAGTCTCCATTGCCAAATCGTTCGGTGCGGG
CATCGCACATGAAATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCGGCTCAAA
ACAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTTGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGATGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGCGAAGTCGTTGACTATGCGTTGCATTCGTTCTCCTATAAGCGTGCGATTGATCGTCAATCGGTGACTT
TAGTGGTCGAGGACGACTTCGACTATTTCGGCAGTGATACGCTGTTGAAATTTGCACTGTATAACTTGCTGAAAAACGCG
TTCTATTATCAGAACAGCGAGCAGTTCCATATTGATGTGACCCTGAAAACCCAGGGCAATCAGAACCTCATCGTGGTCAA
AGATAATGGCGTAGGCATTGCGCCGGATCGCATCGACGATATCTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ACGGACTTGGATTACCCTTCTGCCGCAAAGTGATGAAATCTTTTGGCGGTAACATTGCGTGTGCGTCGGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTCTGTATGAGTCGCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAAGGATTAATGAGTCGCCATTTAAGTGAGACATCGTTTTATCAGGGATTCCGTCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAATTCGAATATGATGCCATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGTAAACTGCACTTTACTGAAGCGCAAATTGTCTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATTGAGCGCCATTTACGCGTAACGCCGCTGGACATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAGCTGTTCTTTGATGTCGCGGAACTGGTTCAGGATCGCAACGTGATTCCGCAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGTTGCGTACCTTCACCGCGTTGATGCTAGAAAAGCAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTGATCCTGATGG
ATATCGAAATGCCGTTTATCGACGGCATAGAAGCAACACGGGTTATTCGTGATTCGGACAAGCCGTACCGCCACATTCCT
ATTGTCGGGCACACAGGTGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCTGATAAAGACAAACTACTTGGTAAACTGGCAAACTGGATCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591