Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   HPK20_RS15505 Genome accession   NZ_CP053665
Coordinates   139467..140564 (+) Length   365 a.a.
NCBI ID   WP_038158098.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 111723..139256 139467..140564 flank 211


Gene organization within MGE regions


Location: 111723..140564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS15310 (HPK20_15335) - 111723..112496 (-) 774 WP_171934162.1 hypothetical protein -
  HPK20_RS15315 (HPK20_15340) - 112511..113353 (-) 843 WP_171934163.1 hypothetical protein -
  HPK20_RS15320 (HPK20_15345) - 113496..114845 (-) 1350 WP_171934164.1 integrase arm-type DNA-binding domain-containing protein -
  HPK20_RS15325 (HPK20_15350) - 115175..115915 (+) 741 WP_171934165.1 NYN domain-containing protein -
  HPK20_RS15330 (HPK20_15355) - 116054..116596 (+) 543 WP_171934166.1 hypothetical protein -
  HPK20_RS15335 (HPK20_15360) - 116671..116922 (-) 252 WP_004726819.1 hypothetical protein -
  HPK20_RS15340 (HPK20_15365) - 116913..117143 (-) 231 WP_171934167.1 hypothetical protein -
  HPK20_RS15345 (HPK20_15370) - 117154..117570 (-) 417 WP_171934168.1 glycoside hydrolase family protein -
  HPK20_RS15350 (HPK20_15375) - 117686..118219 (-) 534 WP_171934169.1 tail fiber assembly protein -
  HPK20_RS22665 - 118223..119398 (-) 1176 WP_233939586.1 phage tail protein -
  HPK20_RS15360 (HPK20_15385) - 119395..119874 (-) 480 WP_171934170.1 hypothetical protein -
  HPK20_RS15365 (HPK20_15390) - 119856..120902 (-) 1047 WP_171934171.1 baseplate J/gp47 family protein -
  HPK20_RS15370 (HPK20_15395) - 120899..121285 (-) 387 WP_075990092.1 phage GP46 family protein -
  HPK20_RS15375 (HPK20_15400) - 121282..121857 (-) 576 WP_171934172.1 phage baseplate assembly protein V -
  HPK20_RS15380 (HPK20_15405) - 121850..122788 (-) 939 WP_171934173.1 phage tail protein -
  HPK20_RS15385 (HPK20_15410) - 122785..123975 (-) 1191 WP_171934174.1 DNA circularization N-terminal domain-containing protein -
  HPK20_RS15390 (HPK20_15415) - 124311..125213 (-) 903 WP_165881534.1 HNH endonuclease -
  HPK20_RS15395 (HPK20_15420) - 125362..125595 (-) 234 WP_171934175.1 ogr/Delta-like zinc finger family protein -
  HPK20_RS15400 (HPK20_15425) - 125605..128235 (-) 2631 WP_171934176.1 replication endonuclease -
  HPK20_RS15405 (HPK20_15430) - 128232..128468 (-) 237 WP_055452454.1 hypothetical protein -
  HPK20_RS15410 (HPK20_15435) - 128450..128917 (-) 468 WP_171934177.1 DUF3850 domain-containing protein -
  HPK20_RS15415 (HPK20_15440) - 128914..129210 (-) 297 WP_171934178.1 hypothetical protein -
  HPK20_RS15420 (HPK20_15445) - 129283..129615 (-) 333 WP_004726788.1 hypothetical protein -
  HPK20_RS15425 (HPK20_15450) - 129625..130164 (-) 540 WP_014257423.1 phage regulatory CII family protein -
  HPK20_RS15430 (HPK20_15455) - 130222..130680 (-) 459 WP_004726785.1 hypothetical protein -
  HPK20_RS15435 (HPK20_15460) - 130831..131556 (+) 726 WP_171934179.1 S24 family peptidase -
  HPK20_RS15440 (HPK20_15465) - 131832..132185 (+) 354 WP_165881531.1 hypothetical protein -
  HPK20_RS15445 (HPK20_15470) - 132280..132645 (-) 366 WP_165881530.1 hypothetical protein -
  HPK20_RS15450 (HPK20_15475) - 132777..133586 (-) 810 WP_165881529.1 hypothetical protein -
  HPK20_RS15455 (HPK20_15480) - 133576..134019 (-) 444 WP_165881528.1 hypothetical protein -
  HPK20_RS15465 (HPK20_15490) - 134190..134498 (-) 309 WP_165881527.1 hypothetical protein -
  HPK20_RS15470 (HPK20_15495) - 134582..134863 (-) 282 WP_165881526.1 hypothetical protein -
  HPK20_RS15475 (HPK20_15500) - 135179..136147 (+) 969 WP_171934180.1 tyrosine-type recombinase/integrase -
  HPK20_RS15480 (HPK20_15505) - 136309..136626 (-) 318 WP_020329287.1 DUF496 family protein -
  HPK20_RS15485 (HPK20_15510) - 136816..137013 (+) 198 WP_020329288.1 hypothetical protein -
  HPK20_RS15490 (HPK20_15515) - 137058..137693 (+) 636 WP_020433719.1 YceH family protein -
  HPK20_RS15495 (HPK20_15520) - 137704..137985 (+) 282 WP_020433718.1 GIY-YIG nuclease family protein -
  HPK20_RS15500 (HPK20_15525) - 138099..139256 (+) 1158 WP_020433716.1 conjugal transfer protein TraF -
  HPK20_RS15505 (HPK20_15530) luxP 139467..140564 (+) 1098 WP_038158098.1 autoinducer 2-binding periplasmic protein LuxP Regulator

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41574.84 Da        Isoelectric Point: 5.0199

>NTDB_id=446148 HPK20_RS15505 WP_038158098.1 139467..140564(+) (luxP) [Vibrio fluvialis strain A8]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYRERVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=446148 HPK20_RS15505 WP_038158098.1 139467..140564(+) (luxP) [Vibrio fluvialis strain A8]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAAACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAGAGCAAGCCTGTGACCATTTCGGTCGTCTACCCGGGCCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTATCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCGTTAATGGAAGCGCTGAAAAACAACACCGATTATCTGATCTTTA
CCCTCGACACTACGCGTCACCGCAAGTTTATCGAGCATGTTCTCAGCTCTTCTCCAACCAAATTGATTCTTCAGAACATC
ACCACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACTGGTGCGCAGCAACT
GGCGCAGTATTATCGTGAACGCGTGCCTAAAGGCAGCAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCCACT
CAGGAGAGCGGCTACGAAGCAACGCTCAACATCCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
TGTGGCACTGGGTGCTGCACAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGTTGGGGCGGTGGCTCGG
CAGAGCTTGAAGCGCTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGTATTGCAATGGCG
GAAGCCATCAAACGCGACCTTGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAGAAGA
TAGTTCGCAAAAAATCGATGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704