Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPK20_RS06080 Genome accession   NZ_CP053664
Coordinates   1320158..1321582 (-) Length   474 a.a.
NCBI ID   WP_171933560.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1315158..1326582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS06060 (HPK20_06060) - 1315228..1317936 (+) 2709 WP_171933559.1 EAL domain-containing protein -
  HPK20_RS06065 (HPK20_06065) cdd 1317983..1318870 (-) 888 WP_020432570.1 cytidine deaminase -
  HPK20_RS06070 (HPK20_06070) - 1319072..1319752 (-) 681 WP_075988636.1 LrgB family protein -
  HPK20_RS06075 (HPK20_06075) - 1319743..1320117 (-) 375 WP_020327588.1 CidA/LrgA family protein -
  HPK20_RS06080 (HPK20_06080) sbcB 1320158..1321582 (-) 1425 WP_171933560.1 exodeoxyribonuclease I Machinery gene
  HPK20_RS06085 (HPK20_06085) - 1321820..1322032 (+) 213 WP_047458980.1 hypothetical protein -
  HPK20_RS06090 (HPK20_06090) - 1322112..1323491 (-) 1380 WP_171933561.1 L-cystine transporter -
  HPK20_RS06095 (HPK20_06095) - 1323692..1324375 (-) 684 WP_171933562.1 NAD(P)H-binding protein -
  HPK20_RS06100 (HPK20_06100) - 1324760..1325371 (+) 612 WP_171933563.1 flavin reductase family protein -
  HPK20_RS06105 (HPK20_06105) cobT 1325385..1326413 (+) 1029 WP_171933564.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54429.87 Da        Isoelectric Point: 5.2378

>NTDB_id=446129 HPK20_RS06080 WP_171933560.1 1320158..1321582(-) (sbcB) [Vibrio fluvialis strain A8]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVLYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELNITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=446129 HPK20_RS06080 WP_171933560.1 1320158..1321582(-) (sbcB) [Vibrio fluvialis strain A8]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTGCGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGCTCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTATAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAGAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCAGAAGGCATTGTGTGGCCGGAAAACGACGAAGGTTTTACC
AGCTTCAAACTAGAGCATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCCGATGTGATTGC
GACGATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCTTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTACATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGAATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
CGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGACGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGAATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTATTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACGCACCTGCCAGATTACATGCTGAATCTGGAAAACTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.298

99.789

0.831