Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HPK20_RS04390 Genome accession   NZ_CP053664
Coordinates   948200..949561 (+) Length   453 a.a.
NCBI ID   WP_024373970.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 943200..954561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS04370 (HPK20_04370) - 943206..944072 (-) 867 WP_047461911.1 MBL fold metallo-hydrolase -
  HPK20_RS04375 (HPK20_04375) - 944259..944897 (+) 639 WP_171933459.1 TetR/AcrR family transcriptional regulator -
  HPK20_RS04385 (HPK20_04385) uvrB 945883..947913 (+) 2031 WP_171933460.1 excinuclease ABC subunit UvrB -
  HPK20_RS04390 (HPK20_04390) luxO 948200..949561 (+) 1362 WP_024373970.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HPK20_RS04395 (HPK20_04395) luxU 949568..949906 (+) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  HPK20_RS04400 (HPK20_04400) - 949895..950785 (-) 891 WP_154184636.1 YvcK family protein -
  HPK20_RS04405 (HPK20_04405) moaA 951096..952085 (+) 990 WP_038127045.1 GTP 3',8-cyclase MoaA -
  HPK20_RS04410 (HPK20_04410) moaB 952157..952669 (+) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  HPK20_RS04415 (HPK20_04415) moaC 952679..953158 (+) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPK20_RS04420 (HPK20_04420) moaD 953155..953400 (+) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  HPK20_RS04425 (HPK20_04425) moaE 953402..953857 (+) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50275.49 Da        Isoelectric Point: 5.5480

>NTDB_id=446121 HPK20_RS04390 WP_024373970.1 948200..949561(+) (luxO) [Vibrio fluvialis strain A8]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISVPKASAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=446121 HPK20_RS04390 WP_024373970.1 948200..949561(+) (luxO) [Vibrio fluvialis strain A8]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAATCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGTATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCGTTCATCGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAACTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAACTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGCTTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTCAAACAATACGAATGGCC
GGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.48

98.455

0.901