Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPK20_RS02395 Genome accession   NZ_CP053664
Coordinates   501183..501701 (+) Length   172 a.a.
NCBI ID   WP_171933342.1    Uniprot ID   -
Organism   Vibrio fluvialis strain A8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 496183..506701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK20_RS02385 (HPK20_02385) gshA 498988..500553 (+) 1566 WP_171933340.1 glutamate--cysteine ligase -
  HPK20_RS02390 (HPK20_02390) - 500555..501157 (+) 603 WP_171933341.1 hypothetical protein -
  HPK20_RS02395 (HPK20_02395) luxS 501183..501701 (+) 519 WP_171933342.1 S-ribosylhomocysteine lyase Regulator
  HPK20_RS02400 (HPK20_02400) - 501770..503044 (-) 1275 WP_171933343.1 HlyC/CorC family transporter -
  HPK20_RS02405 (HPK20_02405) - 503136..503930 (-) 795 WP_171933344.1 inner membrane protein YpjD -
  HPK20_RS02410 (HPK20_02410) ffh 504143..505525 (+) 1383 WP_020330453.1 signal recognition particle protein -
  HPK20_RS02415 (HPK20_02415) rpsP 505751..505999 (+) 249 WP_020330454.1 30S ribosomal protein S16 -
  HPK20_RS02420 (HPK20_02420) rimM 506027..506581 (+) 555 WP_020330455.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18939.90 Da        Isoelectric Point: 5.5627

>NTDB_id=446118 HPK20_RS02395 WP_171933342.1 501183..501701(+) (luxS) [Vibrio fluvialis strain A8]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGTNVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=446118 HPK20_RS02395 WP_171933342.1 501183..501701(+) (luxS) [Vibrio fluvialis strain A8]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGTATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ATACGCTGGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTACGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
GATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAACTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCAGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913