Detailed information NTG0446115

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPK20_RS02275
• Genome accession: NZ_CP053664
• Coordinates: 479285..480271 (+)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain A8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 474285..485271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPK20_RS02240 (HPK20_02240)	ftsB	474354..474635 (+)	282	WP_020330423.1	cell division protein FtsB	-
HPK20_RS02245 (HPK20_02245)	ispD	474632..475342 (+)	711	WP_171933335.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPK20_RS02250 (HPK20_02250)	ispF	475345..475821 (+)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPK20_RS02255 (HPK20_02255)	truD	475853..476899 (+)	1047	WP_171933336.1	tRNA pseudouridine(13) synthase TruD	-
HPK20_RS02260 (HPK20_02260)	surE	476892..477659 (+)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
HPK20_RS02265 (HPK20_02265)	-	477652..478278 (+)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPK20_RS02270 (HPK20_02270)	nlpD	478278..479213 (+)	936	WP_020429687.1	murein hydrolase activator NlpD	-
HPK20_RS02275 (HPK20_02275)	rpoS	479285..480271 (+)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
HPK20_RS02280 (HPK20_02280)	mutS	480336..482897 (-)	2562	WP_171933337.1	DNA mismatch repair protein MutS	-
HPK20_RS02285 (HPK20_02285)	pncC	482982..483470 (+)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
HPK20_RS02290 (HPK20_02290)	recA	483643..484695 (+)	1053	WP_020330433.1	recombinase RecA	Machinery gene
HPK20_RS02295 (HPK20_02295)	recX	484765..485223 (+)	459	WP_047459347.1	recombination regulator RecX	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=446115 HPK20_RS02275 WP_020429689.1 479285..480271(+) (rpoS) [Vibrio fluvialis strain A8]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=446115 HPK20_RS02275 WP_020429689.1 479285..480271(+) (rpoS) [Vibrio fluvialis strain A8]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGTAATCG
TGGCCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGCTGCTGGATATCATTCCGGACATCAATAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887