Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   O3O_RS20300 Genome accession   NC_018661
Coordinates   3970902..3971507 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O104:H4 str. 2009EL-2071     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3965902..3976507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3O_RS20280 (O3O_06185) aes 3965939..3966898 (+) 960 WP_000801832.1 acetyl esterase -
  O3O_RS20285 (O3O_06180) hemH 3966895..3967857 (-) 963 WP_001250088.1 ferrochelatase -
  O3O_RS20290 (O3O_06175) adk 3968093..3968737 (-) 645 WP_001220233.1 adenylate kinase -
  O3O_RS20295 (O3O_06170) htpG 3968918..3970792 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  O3O_RS20300 (O3O_06165) recR 3970902..3971507 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  O3O_RS20305 (O3O_06160) ybaB 3971507..3971836 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  O3O_RS20310 (O3O_06155) dnaX 3971889..3973820 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  O3O_RS20315 (O3O_06150) apt 3973949..3974500 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  O3O_RS20320 (O3O_06145) ybaN 3974653..3975030 (-) 378 WP_001188905.1 DUF454 family protein -
  O3O_RS20325 (O3O_06140) priC 3975100..3975627 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  O3O_RS20330 (O3O_06135) rsmS 3975641..3975802 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  O3O_RS32575 - 3975855..3975953 (-) 99 Protein_3903 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=44607 O3O_RS20300 WP_001195025.1 3970902..3971507(-) (recR) [Escherichia coli O104:H4 str. 2009EL-2071]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=44607 O3O_RS20300 WP_001195025.1 3970902..3971507(-) (recR) [Escherichia coli O104:H4 str. 2009EL-2071]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment