Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   I3J23_RS17280 Genome accession   NZ_CP065159
Coordinates   3386503..3386952 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3381503..3391952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS17240 (I3J23_17240) ctaE 3381633..3382256 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  I3J23_RS17245 (I3J23_17245) ctaF 3382259..3382591 (+) 333 WP_003154481.1 cytochrome c oxidase subunit IVB -
  I3J23_RS17250 (I3J23_17250) ctaG 3382616..3383500 (+) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  I3J23_RS17255 (I3J23_17255) - 3383534..3383893 (-) 360 WP_003154479.1 YugN family protein -
  I3J23_RS17260 (I3J23_17260) - 3384034..3384477 (+) 444 WP_003154478.1 CBS domain-containing protein -
  I3J23_RS17265 (I3J23_17265) - 3384562..3385602 (+) 1041 WP_048367228.1 CAP domain-containing protein -
  I3J23_RS17270 (I3J23_17270) - 3385767..3386177 (+) 411 WP_014304959.1 YlbD family protein -
  I3J23_RS17275 (I3J23_17275) - 3386193..3386432 (+) 240 WP_003154475.1 YlbE-like family protein -
  I3J23_RS17280 (I3J23_17280) ylbF 3386503..3386952 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  I3J23_RS17285 (I3J23_17285) - 3387011..3387283 (+) 273 WP_003154470.1 YlbG family protein -
  I3J23_RS17290 (I3J23_17290) - 3387374..3387583 (+) 210 WP_015388275.1 hypothetical protein -
  I3J23_RS17295 (I3J23_17295) rsmD 3387583..3388137 (+) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I3J23_RS17300 (I3J23_17300) coaD 3388142..3388624 (+) 483 WP_043867073.1 pantetheine-phosphate adenylyltransferase -
  I3J23_RS17305 (I3J23_17305) ylbJ 3388643..3389869 (-) 1227 WP_044053185.1 sporulation integral membrane protein YlbJ -
  I3J23_RS17310 (I3J23_17310) - 3390049..3390828 (+) 780 WP_015388274.1 patatin family protein -
  I3J23_RS17315 (I3J23_17315) sepM 3390834..3391856 (+) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=445856 I3J23_RS17280 WP_003154472.1 3386503..3386952(+) (ylbF) [Bacillus amyloliquefaciens strain GXU-1]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=445856 I3J23_RS17280 WP_003154472.1 3386503..3386952(+) (ylbF) [Bacillus amyloliquefaciens strain GXU-1]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAACAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879