Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   I3J23_RS17315 Genome accession   NZ_CP065159
Coordinates   3390834..3391856 (+) Length   340 a.a.
NCBI ID   WP_003154464.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3385834..3396856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS17275 (I3J23_17275) - 3386193..3386432 (+) 240 WP_003154475.1 YlbE-like family protein -
  I3J23_RS17280 (I3J23_17280) ylbF 3386503..3386952 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  I3J23_RS17285 (I3J23_17285) - 3387011..3387283 (+) 273 WP_003154470.1 YlbG family protein -
  I3J23_RS17290 (I3J23_17290) - 3387374..3387583 (+) 210 WP_015388275.1 hypothetical protein -
  I3J23_RS17295 (I3J23_17295) rsmD 3387583..3388137 (+) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I3J23_RS17300 (I3J23_17300) coaD 3388142..3388624 (+) 483 WP_043867073.1 pantetheine-phosphate adenylyltransferase -
  I3J23_RS17305 (I3J23_17305) ylbJ 3388643..3389869 (-) 1227 WP_044053185.1 sporulation integral membrane protein YlbJ -
  I3J23_RS17310 (I3J23_17310) - 3390049..3390828 (+) 780 WP_015388274.1 patatin family protein -
  I3J23_RS17315 (I3J23_17315) sepM 3390834..3391856 (+) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator
  I3J23_RS17320 (I3J23_17320) - 3391875..3393122 (-) 1248 WP_003154462.1 nucleotidyltransferase -
  I3J23_RS17325 (I3J23_17325) - 3393331..3393849 (+) 519 WP_003154459.1 DUF177 domain-containing protein -
  I3J23_RS17330 (I3J23_17330) rpmF 3393871..3394050 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  I3J23_RS17335 (I3J23_17335) gerR 3394209..3394784 (+) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  I3J23_RS17340 (I3J23_17340) - 3394825..3395307 (-) 483 WP_015388272.1 N-acetyltransferase -
  I3J23_RS17345 (I3J23_17345) - 3395470..3396351 (+) 882 WP_046559575.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37418.97 Da        Isoelectric Point: 7.3848

>NTDB_id=445857 I3J23_RS17315 WP_003154464.1 3390834..3391856(+) (sepM) [Bacillus amyloliquefaciens strain GXU-1]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIFASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=445857 I3J23_RS17315 WP_003154464.1 3390834..3391856(+) (sepM) [Bacillus amyloliquefaciens strain GXU-1]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATTGCTGTTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGGATTTTCGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTCCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCGTTATATACGGATC
GGAACGTGAAAGTAAAGCCGGATCTCCATTTCAGCATTGAAAATATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(100-218)

PDZ domain (PDZ_2)

(128-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(231-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.663

100

0.391