Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   I3J23_RS16005 Genome accession   NZ_CP065159
Coordinates   3103904..3105040 (+) Length   378 a.a.
NCBI ID   WP_088005367.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3098904..3110040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS15985 (I3J23_15985) - 3099350..3100795 (+) 1446 WP_046559506.1 tagaturonate reductase -
  I3J23_RS15990 (I3J23_15990) - 3100792..3102285 (+) 1494 WP_046559507.1 altronate dehydratase family protein -
  I3J23_RS15995 (I3J23_15995) - 3102319..3103083 (-) 765 WP_003154887.1 sulfite exporter TauE/SafE family protein -
  I3J23_RS16000 (I3J23_16000) - 3103232..3103699 (-) 468 WP_014304838.1 DinB family protein -
  I3J23_RS16005 (I3J23_16005) rapC 3103904..3105040 (+) 1137 WP_088005367.1 Rap family tetratricopeptide repeat protein Regulator
  I3J23_RS16010 (I3J23_16010) - 3105030..3105164 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  I3J23_RS16015 (I3J23_16015) - 3105307..3106260 (+) 954 WP_046559508.1 N-acetylmuramoyl-L-alanine amidase -
  I3J23_RS16020 (I3J23_16020) - 3106298..3106675 (-) 378 WP_003154878.1 PH domain-containing protein -
  I3J23_RS16025 (I3J23_16025) - 3106785..3107390 (+) 606 WP_032858666.1 poly-gamma-glutamate hydrolase family protein -
  I3J23_RS16030 (I3J23_16030) - 3107545..3108135 (-) 591 WP_003154873.1 ImmA/IrrE family metallo-endopeptidase -
  I3J23_RS16035 (I3J23_16035) xre 3108284..3108622 (-) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  I3J23_RS16040 (I3J23_16040) - 3108814..3108993 (+) 180 WP_003154869.1 hypothetical protein -
  I3J23_RS16045 (I3J23_16045) - 3108983..3109810 (+) 828 WP_046559509.1 FaeA/PapI family transcriptional regulator -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45092.33 Da        Isoelectric Point: 4.9175

>NTDB_id=445848 I3J23_RS16005 WP_088005367.1 3103904..3105040(+) (rapC) [Bacillus amyloliquefaciens strain GXU-1]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
RTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=445848 I3J23_RS16005 WP_088005367.1 3103904..3105040(+) (rapC) [Bacillus amyloliquefaciens strain GXU-1]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATTGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGCGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATATCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTCAATCTGTTCCAATTTTTGCATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CGCACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426