Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   I3J23_RS10135 Genome accession   NZ_CP065159
Coordinates   1962591..1962821 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957591..1967821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS10105 (I3J23_10105) ridA 1957779..1958159 (+) 381 WP_207579592.1 2-iminobutanoate/2-iminopropanoate deaminase -
  I3J23_RS10110 (I3J23_10110) spoVG 1958355..1958648 (+) 294 WP_004264660.1 septation regulator SpoVG -
  I3J23_RS10115 (I3J23_10115) glmU 1958840..1960210 (+) 1371 WP_043866776.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  I3J23_RS10120 (I3J23_10120) - 1960232..1961185 (+) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  I3J23_RS10125 (I3J23_10125) - 1961270..1961878 (+) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  I3J23_RS10130 (I3J23_10130) pth 1961963..1962529 (+) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  I3J23_RS10135 (I3J23_10135) subA/fin 1962591..1962821 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  I3J23_RS10140 (I3J23_10140) mfd 1962891..1966424 (+) 3534 WP_043866777.1 transcription-repair coupling factor -
  I3J23_RS10145 (I3J23_10145) spoVT 1966561..1967097 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=445803 I3J23_RS10135 WP_004264650.1 1962591..1962821(+) (subA/fin) [Bacillus amyloliquefaciens strain GXU-1]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=445803 I3J23_RS10135 WP_004264650.1 1962591..1962821(+) (subA/fin) [Bacillus amyloliquefaciens strain GXU-1]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCAACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868