Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I3J23_RS09415 Genome accession   NZ_CP065159
Coordinates   1831926..1832720 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GXU-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826926..1837720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3J23_RS09395 (I3J23_09395) - 1827310..1828317 (-) 1008 WP_014306163.1 ThiF family adenylyltransferase -
  I3J23_RS09400 (I3J23_09400) - 1828549..1829967 (-) 1419 WP_207579588.1 HAMP domain-containing sensor histidine kinase -
  I3J23_RS19925 - 1829964..1830080 (-) 117 Protein_1860 winged helix-turn-helix domain-containing protein -
  I3J23_RS09410 (I3J23_09410) htrA 1830643..1831839 (-) 1197 WP_043867591.1 S1C family serine protease Regulator
  I3J23_RS09415 (I3J23_09415) vicX 1831926..1832720 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  I3J23_RS09420 (I3J23_09420) yycI 1832735..1833574 (-) 840 WP_014306169.1 two-component system regulatory protein YycI -
  I3J23_RS09425 (I3J23_09425) yycH 1833561..1834919 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  I3J23_RS09430 (I3J23_09430) walK 1834909..1836744 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  I3J23_RS09435 (I3J23_09435) walR 1836751..1837458 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=445795 I3J23_RS09415 WP_004393110.1 1831926..1832720(-) (vicX) [Bacillus amyloliquefaciens strain GXU-1]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=445795 I3J23_RS09415 WP_004393110.1 1831926..1832720(-) (vicX) [Bacillus amyloliquefaciens strain GXU-1]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGATGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTTGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTAAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527